Locus 3912

Sequence ID X_DroMel_CAF1
Location 10,465,427 – 10,465,519
Length 92
Max. P 0.619949
window6418

overview

Window 8

Location 10,465,427 – 10,465,519
Length 92
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 97.83
Mean single sequence MFE -37.32
Consensus MFE -35.38
Energy contribution -35.83
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -1.65
Structure conservation index 0.95
SVM decision value 0.18
SVM RNA-class probability 0.619949
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10465427 92 - 22224390
AGGAAGUGGCGCUGCCGGCGCCGCCGUCUCUGUCGGCGUCGCUGCCUUCCGUUGCGACUGCGGCGAGGACAUACACAUAAAUAAAAAGUCCU
((((.(((((((.....))))))).(((..(((((..(((((.((.....)).)))))..)))))..)))..................)))) ( -37.40)
>DroSec_CAF1 9755 92 - 1
AGGAAGUGGCGCUGCCGACGCCGCCGUCGCUGUCGGCGUCGCUGCCAUCCGUUGCGACUGCGGCGAGGACAUACACAUAAAUAAAAAGUCCU
.(((.(..(((.((((((((.((....)).)))))))).)))..)..)))(((((....))))).(((((.................))))) ( -36.13)
>DroYak_CAF1 9999 92 - 1
AGGAAGUGGCGCUGCCGGCGCCGCCGUCGCUGUCGGCGUCGCUGCCUUCCGUUGCGACUGCGGCGAGGACAUACACAUAAAUAAAAAGUCCU
(((.((((((((((.((((((....).))))).)))))))))).)))..((((((....))))))(((((.................))))) ( -38.43)
>consensus
AGGAAGUGGCGCUGCCGGCGCCGCCGUCGCUGUCGGCGUCGCUGCCUUCCGUUGCGACUGCGGCGAGGACAUACACAUAAAUAAAAAGUCCU
.(((((..(((.((((((((.((....)).)))))))).)))..).))))(((((....))))).(((((.................))))) (-35.38 = -35.83 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:31 2006