Locus 391

Sequence ID X_DroMel_CAF1
Location 1,165,301 – 1,165,421
Length 120
Max. P 0.695120
window593

overview

Window 3

Location 1,165,301 – 1,165,421
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 97.89
Mean single sequence MFE -48.97
Consensus MFE -47.58
Energy contribution -47.57
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.73
Structure conservation index 0.97
SVM decision value 0.34
SVM RNA-class probability 0.695120
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1165301 120 + 22224390
GCUGGCAGCGCAUUGAACGCUCGCCGCUCAAGACGUGCCCACGGCAGCGGCGACUUGGCCAAAAGCAACACGACGAGCACGAGCACGUCGCCGCGGCAAGCCGAAGAAGUUGGCCAAGAC
.......(((.......)))((((((((.....(((....)))..))))))))(((((((((...(....(((((.((....)).)))))...(((....)))..)...))))))))).. ( -48.30)
>DroSec_CAF1 1391 117 + 1
GCUGGCAGCGCAUUGAACGCUCGCCGCUCAAGACGUGCCCACGGCAGCGGCGACUUGGCCAAAAGCAACACGACGAGCACGAGCACGUCG---CGGCGAGCCGAAGAAGUUGGCCAAGAC
.......(((.......)))((((((((.....(((....)))..))))))))(((((((((...(....(((((.((....)).)))))---(((....)))..)...))))))))).. ( -48.30)
>DroSim_CAF1 1993 117 + 1
GCUGGCAGCGCAUUGAACGCUCGCCGCUCAAGACGUGCCCACGGCAGCGGCGACUUGGCCAAAAGCAACACGACGAGCACGAGCACGUCG---CGGCGAGCCGAAGAAGUUGGCCAAGAC
.......(((.......)))((((((((.....(((....)))..))))))))(((((((((...(....(((((.((....)).)))))---(((....)))..)...))))))))).. ( -48.30)
>DroEre_CAF1 387 117 + 1
GCUGGCAGCGCAUUGAACGCUCGCCGCUCAAGACGUGCCCACGGCAGCGGCGACUUGGCCAACAGCAACACGACGAGCACGAGCACGUCG---CGGCGAGCCGAAGAAGUUGGCCAAGAC
.......(((.......)))((((((((.....(((....)))..))))))))((((((((((.......(((((.((....)).)))))---(((....))).....)))))))))).. ( -51.00)
>consensus
GCUGGCAGCGCAUUGAACGCUCGCCGCUCAAGACGUGCCCACGGCAGCGGCGACUUGGCCAAAAGCAACACGACGAGCACGAGCACGUCG___CGGCGAGCCGAAGAAGUUGGCCAAGAC
.......(((.......)))((((((((.....(((....)))..))))))))(((((((((...(....(((((.((....)).)))))...(((....)))..)...))))))))).. (-47.58 = -47.57 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:21 2006