Locus 3906

Sequence ID X_DroMel_CAF1
Location 10,458,742 – 10,458,845
Length 103
Max. P 0.558446
window6409

overview

Window 9

Location 10,458,742 – 10,458,845
Length 103
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 91.59
Mean single sequence MFE -29.80
Consensus MFE -22.61
Energy contribution -25.93
Covariance contribution 3.31
Combinations/Pair 1.03
Mean z-score -1.69
Structure conservation index 0.76
SVM decision value 0.05
SVM RNA-class probability 0.558446
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10458742 103 - 22224390
AGGCUACGAUUGCAGAGAUGGAGAUGGCAGGGGAUGGCUGGAUAGAACGGUAUCGUUUGCUGUUGCCGCUGUUUUCGAUAUUGUUGUUAUGGUUCUAAGGUGG
.(((((..((.((((.(.((((((((((.((.((((((......(((((....))))))))))).)))))))))))).).)))).))..)))))......... ( -28.80)
>DroSec_CAF1 3194 103 - 1
AGGCUACGAUGGCAGAGAUGUUGAUGGCAGGGGAUAGCUGGAUAGAACGGUAUCGUUUGCUGUUGCCGCUGUUUUCGAUAUUGUUGUUAUGGUUCUAAGGUGG
.((..((.(((((((.((((((((..((((.((.((((.((...(((((....))))).)))))))).))))..)))))))).))))))).)).))....... ( -34.40)
>DroSim_CAF1 3158 103 - 1
AGGCUACGAUGGCAGAGAUGUUGAUGGCAGGGGAUGGCUGGAUAGAACGGUAUCGUUUGCUGUUGCCGCUGUUUUCGAUAUUGUUGUUAUGGUUCUAAGGUGG
.((..((.(((((((.((((((((..((((.((.((((.((...(((((....))))).)))))))).))))..)))))))).))))))).)).))....... ( -33.00)
>DroYak_CAF1 3112 90 - 1
AGGCUACGAUGGCAG------------CA-GGGAUGGCUGAAUAGAACGGUAUCGUUUGCUGUUGCCGCUGUUUUCGAUAUUGUUGUUAUGGUUCUAAGGUGG
.((..((.(((((((------------((-(..((.(..(((((((((((((.....)))))))....)))))).).)).)))))))))).)).))....... ( -23.00)
>consensus
AGGCUACGAUGGCAGAGAUGUUGAUGGCAGGGGAUGGCUGGAUAGAACGGUAUCGUUUGCUGUUGCCGCUGUUUUCGAUAUUGUUGUUAUGGUUCUAAGGUGG
.((..((.(((((((.((((((((..((((.((.((((.((...(((((....))))).)))))))).))))..)))))))).))))))).)).))....... (-22.61 = -25.93 +   3.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:24 2006