Locus 3905

Sequence ID X_DroMel_CAF1
Location 10,457,250 – 10,457,348
Length 98
Max. P 0.997574
window6408

overview

Window 8

Location 10,457,250 – 10,457,348
Length 98
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 62.93
Mean single sequence MFE -36.30
Consensus MFE -19.65
Energy contribution -21.43
Covariance contribution 1.78
Combinations/Pair 1.04
Mean z-score -2.02
Structure conservation index 0.54
SVM decision value 2.89
SVM RNA-class probability 0.997574
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10457250 98 - 22224390
CAGCUACGCCAAGUCCAAGAAGCAGGAGGCCAAGGCGGCGACAGCGGCACUUAAGGCCAGCGCCGCAGCGGCUGCGGCGGCAGCCGCCUCCUCCGCCC
..(((.(...........).))).(((((...(((((((....(((((.(....))))..((((((((...)))))))))).)))))))))))).... ( -46.60)
>DroSec_CAF1 1692 98 - 1
CAGCUACGCCAAGUCCAAGAAGCAGGAGGCCAAGGCGGCGACGGCAGCACUUAAGGCCAGCGCCGCAGCGGCUGCGGCGGCAGCCGCAUCCUCCGCCC
..(((.(...........).))).(((((.....((((((..(((..........)))..)))))).((((((((....))))))))..))))).... ( -46.50)
>DroSim_CAF1 1677 94 - 1
CAGCUAC--CUAGUC--AGAGGCAGGAGGCAAAGGCGGCGACGGCGGCACUUANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
..(((.(--((.((.--....))))).))).(((((.((....)).)).))).............................................. ( -15.80)
>consensus
CAGCUACGCCAAGUCCAAGAAGCAGGAGGCCAAGGCGGCGACGGCGGCACUUAAGGCCAGCGCCGCAGCGGCUGCGGCGGCAGCCGC_UCCUCCGCCC
..(((.(...........).)))....(((((((((.((....)).)).)))..)))).........((((((((....))))))))........... (-19.65 = -21.43 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:23 2006