Locus 39

Sequence ID X_DroMel_CAF1
Location 173,966 – 174,065
Length 99
Max. P 0.886592
window48

overview

Window 8

Location 173,966 – 174,065
Length 99
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 75.20
Mean single sequence MFE -39.91
Consensus MFE -18.80
Energy contribution -20.41
Covariance contribution 1.62
Combinations/Pair 1.43
Mean z-score -2.14
Structure conservation index 0.47
SVM decision value 0.94
SVM RNA-class probability 0.886592
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 173966 99 + 22224390
UUCUCA---AAUUCGGUAUUUUUCAGCUCUUUUUCCCUGUCCAGCUGCUCUAACUGUUCAAAUAUGUUUUUAGGAUGCGGAUGAGAGUGUGGUACAGAGGCA
......---..(((.(((((.....((((((..(((.(((((((..((.................))..)).))))).))).))))))..))))).)))... ( -19.13)
>DroVir_CAF1 23476 99 + 1
UUCUUG---AGCGCCGCCUCCUCGAGCGCCUUCUCGCGAUCUAGGAGCUCCAGCUGCUCAAAUAUGUUCUUCGGAUGUGGAUGGGUGCUCGGCUUGGUCGCA
......---.(((..(((...((((((((((..(((((......((((.......))))........((....)))))))..))))))))))...)))))). ( -37.90)
>DroPse_CAF1 2011 99 + 1
UUCUUG---AGGGCCGCCUCCUCGAGGGCCUUUUCCCGGUCGAGCAGCUCCAGCUGCUCAAAGAUGUUCUUCGGAUGGGGAUGUGUGCUGGGGGCGGUGGCA
......---...((((((.((((.((.(((...((((.((((((((((....)))))))...((......)).))).)))).).)).)).)))).)))))). ( -51.10)
>DroGri_CAF1 3846 99 + 1
UUUUUG---AGCGCCGCCUCCUCGAGCGCCUUCUCGCGAUCCAGCAGCUCGAGCUGCUCGAAAAUGUUCUUCGGAUGCGGAUGGGAGCUCGGCUUGGUCGCA
......---.(((..(((...((((((.(((..((((.((((((((((....)))))).(((.......)))))))))))..))).))))))...)))))). ( -42.50)
>DroAna_CAF1 19593 99 + 1
CUCUUGGCCAGCUC---CUGCUCCUUCUCCUUCUCCCUGUCCAGUAGCUCCAGCUGCUCGAAGAUGUUCUUCGGAUGUGGAUGGGAGUGCGGUGCUGUCGCG
......((((((.(---(.((.....(((((..(((.(((((((((((....)))))).((((.....))))))))).))).))))).)))).))))..)). ( -39.40)
>DroPer_CAF1 2019 99 + 1
UUCUUG---AGGGCCGCCUCCUCGAGGGCCUUUUCCCGGUCGAGCAGCUCUAGCUGCUCAAAAAUGUUCUUCGGAUGGGGAUGUGUGCUGGGGGCGGUGGCA
......---...((((((.((((.((.((...((((((...(((((((....)))))))........((....))))))))...)).)).)))).)))))). ( -49.40)
>consensus
UUCUUG___AGCGCCGCCUCCUCGAGCGCCUUCUCCCGGUCCAGCAGCUCCAGCUGCUCAAAAAUGUUCUUCGGAUGCGGAUGGGAGCUCGGCGCGGUCGCA
............((.(((...((.(((((((..((((.((((((((((....))))))..............))))))))..))))))).))...))).)). (-18.80 = -20.41 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:03 2006