Locus 3895

Sequence ID X_DroMel_CAF1
Location 10,413,264 – 10,413,354
Length 90
Max. P 0.885752
window6395

overview

Window 5

Location 10,413,264 – 10,413,354
Length 90
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 65.24
Mean single sequence MFE -18.74
Consensus MFE -7.46
Energy contribution -7.98
Covariance contribution 0.52
Combinations/Pair 1.38
Mean z-score -2.06
Structure conservation index 0.40
SVM decision value 0.94
SVM RNA-class probability 0.885752
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10413264 90 + 22224390
CCUUCCAGCUUAAUAGCCGGAAAUUAAAUCAAGAUUUGCGGGCUCA----------ACUUUUGGGUAUGCCAGCAAAAGAUAAAACA-AAAAAUAAG------ACGA
..((((.(((....))).))))............(((((.(((...----------(((....)))..))).)))))..........-.........------.... ( -18.50)
>DroSim_CAF1 36962 91 + 1
CAUUCCAGCUUAAUAGCCGGAAAUUAAAUCAAGAUUUGCGGGCUCA----------ACUUUUGGGUAUGCCAGCAAAAGAUAAAACACAAAAAUAAG------AAGC
..((((.(((....))).))))............(((((.(((...----------(((....)))..))).)))))....................------.... ( -18.70)
>DroEre_CAF1 60386 87 + 1
CAUUCCAGCUUAAUAGCCGGAAAUUAAAUCAAGAUUUGCGGGCUCA----------ACUUUUGGGUAUGCAACCAAAAAA---AGCG-AAAAAUAGG------AAGA
..((((..........(((.(((((.......))))).)))(((..----------..((((((........))))))..---))).-.......))------)).. ( -19.20)
>DroWil_CAF1 51258 78 + 1
ACUUCAAGCUUAAUAGCCGGAAAUUAAAUCAAGAUUUGUGAG-----------------------AAUGGAA----AAAAGCAAGCG-AAAAGGACCAAAGU-CCGU
.......((((.....(((.....(((((....)))))....-----------------------..)))..----..)))).....-....((((....))-)).. ( -12.50)
>DroMoj_CAF1 62086 98 + 1
CAUUUAAGCUUAAUAGUCGGAAAUUAAAUCAAGAUUUGCGUGCUUCGGGCCAAAAAACCG--GAGAGCGCAAAGAAA------AGCG-GAAACAGAAAAAGUGAAAU
(((((..((((..((((.....))))........(((((((.((((((.........)))--))).)))))))...)------)))(-....).....))))).... ( -24.80)
>consensus
CAUUCCAGCUUAAUAGCCGGAAAUUAAAUCAAGAUUUGCGGGCUCA__________ACUUUUGGGUAUGCAAGCAAAAAA__AAGCG_AAAAAUAAG______AAGA
..((((.(((....))).)))).............(((((..((((...............))))..)))))................................... ( -7.46 =  -7.98 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:11 2006