Locus 3894

Sequence ID X_DroMel_CAF1
Location 10,408,078 – 10,408,173
Length 95
Max. P 0.529939
window6394

overview

Window 4

Location 10,408,078 – 10,408,173
Length 95
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 81.78
Mean single sequence MFE -30.06
Consensus MFE -21.85
Energy contribution -21.37
Covariance contribution -0.48
Combinations/Pair 1.13
Mean z-score -1.51
Structure conservation index 0.73
SVM decision value -0.01
SVM RNA-class probability 0.529939
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10408078 95 - 22224390
UGGCGCUGGAUUAGCGUAGUCGGGAAAAUGCGAGGAAAAUAGGUUGGGACGGAG----------------G-AAAACCAAUAGUCUCAGCUGGCUGGAAAAAGUCGCCGGAG
.((((((...(((((....(((........)))........(((((((((...(----------------(-....))....))))))))).)))))....)).)))).... ( -27.90)
>DroSec_CAF1 50555 95 - 1
UGGCGCUGGAUUAGCGUAGUCGGGAAAAUGCGAGGGAAAUAGGUUGGGACAGCG----------------G-AAAACCAAUAGUCUCAGCUGGCUGGAAAAAGUCGCCGGAG
.((((((...(((((....(((........)))........(((((((((...(----------------(-....))....))))))))).)))))....)).)))).... ( -26.80)
>DroSim_CAF1 31850 95 - 1
UGGCGCUGGAUUAGCGUGGUCGGGAAAAUGCGAGGGAAAUAGGUUGGGACGGCG----------------G-AAAACCAAUAGUCUCAGCUGGCUGGAAAAAGUCGCCGGAG
.((((((...(((((....(((........)))........(((((((((...(----------------(-....))....))))))))).)))))....)).)))).... ( -27.90)
>DroEre_CAF1 55125 108 - 1
UGGCGCUGGAUUAGCGUAGUCGGGAAAAUGCAGGGAAAAUAUGCUGGGCCGGGG----AAAACCAAGCCGGGGACACCUAUAGUCUCAGCUGGCUGGAAAAAGUCGCCGGAG
.((((((...(((((.((((.((((...((.(((............(((..((.----....))..)))(....).))).)).)))).)))))))))....)).)))).... ( -35.40)
>DroYak_CAF1 51720 111 - 1
UGGCGCUGGAUUAGCGUAGUCGUCGAAAUGCAGGGAAAAUAUUUUGGAACUGGGGCCAAAAACCAAACCGG-GAAACCUAUAGUCUCAGCUGGCUGGAAAAAGCCGUCGUAG
.((((((((((((((((..........)))).((.......((((((........))))))......))((-....))..))))).)))).((((......))))))).... ( -32.32)
>consensus
UGGCGCUGGAUUAGCGUAGUCGGGAAAAUGCGAGGAAAAUAGGUUGGGACGGCG________________G_AAAACCAAUAGUCUCAGCUGGCUGGAAAAAGUCGCCGGAG
.((((((((((((((((..(....)..))))..............((.............................))..))))).)))).((((......))))))).... (-21.85 = -21.37 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:10 2006