Locus 3891

Sequence ID X_DroMel_CAF1
Location 10,393,768 – 10,393,883
Length 115
Max. P 0.962979
window6391

overview

Window 1

Location 10,393,768 – 10,393,883
Length 115
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 69.09
Mean single sequence MFE -25.47
Consensus MFE -12.62
Energy contribution -13.41
Covariance contribution 0.78
Combinations/Pair 1.18
Mean z-score -2.28
Structure conservation index 0.50
SVM decision value 1.55
SVM RNA-class probability 0.962979
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10393768 115 - 22224390
GGGGGAAAUCGUCUACAGGAGUUGCCCCAUAAAGGGCACAGUUGUUAUGCUUUAUGUGUUCCUAAUUGGUUGAAGACAUUUAUUUUAUAAACCAAUUCUUGAAUAUAAUAAAAUU
((((.((.((........)).)).))))....((((((.........)))))).(((((((..((((((((.((((......))))...))))))))...)))))))........ ( -25.80)
>DroSec_CAF1 37787 98 - 1
GGGCGAAAUCAUCUACAGGAGUCGCCCAAUAAAGGGCACAGUAGUUAUGCUUUAUGUGUUCUUAAUUGGUUAAAGACA---ACUUUAGAAA-------------AU-AUAUAAUU
((((((..((.......))..))))))....(((((((((..((.....))...))))))))).(((..((((((...---.))))))..)-------------))-........ ( -26.60)
>DroEre_CAF1 42393 90 - 1
GAGC-GAAUCGUUUACAGGAGUCGCCCGAUAAAGGACACA-----UGUGUUUCAUGUGUUCUUCAUGGGUUAAAGAAA-UUAUUUUAUAAG-------------CA-AAAU----
..((-((.((........)).))))((.((.(((((((((-----((.....))))))))))).)).)).........-............-------------..-....---- ( -24.00)
>consensus
GGGCGAAAUCGUCUACAGGAGUCGCCCAAUAAAGGGCACAGU_GUUAUGCUUUAUGUGUUCUUAAUUGGUUAAAGACA_UUAUUUUAUAAA_____________AU_AUAUAAUU
((((((..((.......))..))))))....(((((((((..............))))))))).................................................... (-12.62 = -13.41 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:07 2006