| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,383,706 – 10,383,808 |
| Length | 102 |
| Max. P | 0.760158 |
| Location | 10,383,706 – 10,383,808 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 88.59 |
| Mean single sequence MFE | -28.35 |
| Consensus MFE | -23.05 |
| Energy contribution | -23.55 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.760158 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10383706 102 + 22224390 AAUCUCAAUUGCUUUCGGGGGCGUGGCAGUUUGAGGAAUCAACAGAUGAUUUCGCUGUUGCAGUUCCGGAUUAUAAUUGAAAUCGUUUACAUAUGUA----CAUUC ....(((((((...((.((((((..(((((....(((((((.....))))))))))))..).))))).))...))))))).................----..... ( -29.30) >DroSec_CAF1 27837 99 + 1 AAUCUCAAUUGCUUUCGGGGGCGGGGCAGUUUGAGGAAUCAACAGAUGAUUUCGCUGUUGCAGUUCCGGAUUAUAAUUGAAAUCGUUUACAUAUUUA----CA--- ....(((((((...((.((((((.((((((....(((((((.....))))))))))))).).))))).))...))))))).................----..--- ( -26.90) >DroEre_CAF1 32018 98 + 1 AAUCUCAAUUGCUUUCGGAGGCGGGGCAGUUUGAAGAAUCAACAGAUGAUUUCGCUGUUGCAGUUCCGGAUUAUAAAUGAAAUUGUUCACAUAUGUG--------C (((.(((.(((..(((((((..(.((((((..((((.(((....)))..)))))))))).)..)))))))...))).))).)))...(((....)))--------. ( -21.20) >DroYak_CAF1 26917 106 + 1 AAUCUCAAUUGCUUUCGGAGGCGGGGCAGUUUGAGGCAUCAACAGAUGAUUUCGCUGUUGCGGUUCCGGAUUGUAAUUGAAAUUGUUCACAUGUGUAUGUAUAUAC ....((((((((.(((((((.((.((((((..((((((((....)))).)))))))))).)).)))))))..))))))))...(((..((((....))))..))). ( -36.00) >consensus AAUCUCAAUUGCUUUCGGAGGCGGGGCAGUUUGAGGAAUCAACAGAUGAUUUCGCUGUUGCAGUUCCGGAUUAUAAUUGAAAUCGUUCACAUAUGUA____CA__C ....(((((((..(((((((..(.((((((....(((((((.....))))))))))))).)..)))))))...))))))).......................... (-23.05 = -23.55 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:03 2006