Locus 3886

Sequence ID X_DroMel_CAF1
Location 10,367,128 – 10,367,246
Length 118
Max. P 0.569410
window6384

overview

Window 4

Location 10,367,128 – 10,367,246
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.60
Mean single sequence MFE -20.34
Consensus MFE -15.32
Energy contribution -14.88
Covariance contribution -0.44
Combinations/Pair 1.28
Mean z-score -1.32
Structure conservation index 0.75
SVM decision value 0.07
SVM RNA-class probability 0.569410
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10367128 118 - 22224390
CGGUUAGAUCGCAAAUGCAGUGCAGCAACACUGAGAGG-AAAAUAUGUUUA-AAUCAAUUGGAAUAUGCUAAUCCAUAAUCCAAAAAAAAAAAAAAAAAAACAGAACCAAUAGCUAAUAA
.((((............(((((......))))).....-............-......(((((.((((......)))).)))))....................))))............ ( -17.30)
>DroSec_CAF1 18610 105 - 1
CGGCUGGAUGGCAAAUGCAGUGCAGCUACACUGAGAAG-AAAAUAUGUUUA-AAUCGGUUGGAAUAUGCUAAGCCAUAAUCCAUAA-------------AAUAGAACCAAUAGCUAAUAA
.(((((.((.((....)).)).)))))..(((((...(-((......))).-..)))))((((.((((......)))).))))...-------------..................... ( -20.10)
>DroSim_CAF1 18915 105 - 1
CGGCUGGAUCGCAAAUGCAGUGCAGCUACACUGAGAGG-AAAAUAUGUUUA-AAUCGGUUGGAAUAUGAUAAGCCAUAAUCCAAAA-------------AAUAGAACCAAUAGCUAAUAA
.(((((.((.((....)).)).)))))..(((((...(-((......))).-..)))))((((.((((......)))).))))...-------------..................... ( -22.20)
>DroEre_CAF1 22428 105 - 1
UGGCUAGAUCACAAAUGCAGUGCAGCUACACUGGGAGGAAAAAUCUGUUGA-AAUCAGCUGGAAUGUGCUAAGCCAUUAUCCAUAA-------------AACAAAGCCAGUGGU-CAUAA
......((((((...(.(((((......))))).).((........((((.-...))))(((((((.((...)))))..))))...-------------.......)).)))))-).... ( -24.00)
>DroYak_CAF1 18014 103 - 1
UGGCUAGAUCACAAAUGCAGUGCAGCUACACUGGGGAGGAAAAUAUGCUAAAAAGCAGUUGGAAUGUGCUUAUUCAUAAUCCAUAA-------------AACAAAGUAAAUAGU-AA---
..((((....((...(.(((((......))))).)..(((.....((((....))))....(((((....)))))....)))....-------------......))...))))-..--- ( -18.10)
>consensus
CGGCUAGAUCGCAAAUGCAGUGCAGCUACACUGAGAGG_AAAAUAUGUUUA_AAUCAGUUGGAAUAUGCUAAGCCAUAAUCCAUAA_____________AACAGAACCAAUAGCUAAUAA
.(((((...........(((((......)))))..........................((((.((((......)))).))))...........................)))))..... (-15.32 = -14.88 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:01 2006