Locus 3885

Sequence ID X_DroMel_CAF1
Location 10,361,639 – 10,361,736
Length 97
Max. P 0.702655
window6383

overview

Window 3

Location 10,361,639 – 10,361,736
Length 97
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 82.30
Mean single sequence MFE -25.38
Consensus MFE -14.84
Energy contribution -14.70
Covariance contribution -0.14
Combinations/Pair 1.11
Mean z-score -2.52
Structure conservation index 0.58
SVM decision value 0.36
SVM RNA-class probability 0.702655
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10361639 97 - 22224390
-------UUUUGGCCAUCGGCCAUUUAAUGGCGUAUUUUAUGUGUUGGCUUAUUACUUGAGCUGAAUGUUUAUUGCAUUUGCCAUUU-CAACCAUUU-UAGACCAU
-------...(((((...)))))...((((((..............((((((.....))))))((((((.....)))))))))))).-.........-........ ( -23.70)
>DroPse_CAF1 7894 103 - 1
UCUGGUCUGCUGGCCAUCGGGCAUUUAAUGGCAUAUUUUAUGUGCCGGCUUAUUACUUGAGCUGAAUGUUUAUUGCAUUUGCCAUUU-GU-CCGUUU-UGGGACAU
..(((((....)))))...(((.......(((((((...)))))))((((((.....))))))((((((.....)))))))))...(-((-((....-..))))). ( -34.80)
>DroSec_CAF1 13236 95 - 1
---------UAGGCCAUCGGCCAUUUAAUGGCGUAUUUUAUGUGUUGGCUUAUUACUUGAGCUGAAUGUUUAUUGCAUUUCCCAUUU-CAAACAUUU-UAGACCAU
---------..((((...)))).....((((.....((((.(((((((((((.....))))))((((((.....)))))).......-..)))))..-)))))))) ( -19.70)
>DroSim_CAF1 13568 97 - 1
-------UUUUGGCCAUCGGCCAUUUAAUGGCGUAUUUUAUGUGUUGGCUUAUUACUUGAGCUGAAUGUUUAUUGCAUUUCCCAUUU-CAAACAUUU-UAGACCAU
-------...(((((...)))))....((((.....((((.(((((((((((.....))))))((((((.....)))))).......-..)))))..-)))))))) ( -20.20)
>DroAna_CAF1 6560 87 - 1
-----------GACCAUCGGCCAUUUAAUGGCAUAUUUUAUGUUCUGGCUUAUUACUUGAGCUGAAUGUUUAUUGCAUUUGCCAUUUUCGGACAUAUC--------
-----------........(((((...)))))......(((((((.((((((.....))))))((((((.....)))))).........)))))))..-------- ( -21.40)
>DroPer_CAF1 8103 103 - 1
UCUGGACUGCUGGCCAUCGGGCAUUUAAUGGCAUAUUUUAUGUGCCGGCUUAUUACUUGAGCUGAAUGUUUAUUGCAUUUGCCAUUU-GU-CCGUUU-UCGGACAU
..(((.(....).)))...(((.......(((((((...)))))))((((((.....))))))((((((.....)))))))))...(-((-(((...-.)))))). ( -32.50)
>consensus
_______U_UUGGCCAUCGGCCAUUUAAUGGCAUAUUUUAUGUGCUGGCUUAUUACUUGAGCUGAAUGUUUAUUGCAUUUGCCAUUU_CAAACAUUU_UAGACCAU
..........................(((((((............(((((((.....)))))))(((((.....)))))))))))).................... (-14.84 = -14.70 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:00 2006