Locus 3884

Sequence ID X_DroMel_CAF1
Location 10,361,167 – 10,361,276
Length 109
Max. P 0.685126
window6382

overview

Window 2

Location 10,361,167 – 10,361,276
Length 109
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 82.58
Mean single sequence MFE -29.62
Consensus MFE -20.05
Energy contribution -20.68
Covariance contribution 0.63
Combinations/Pair 1.19
Mean z-score -1.76
Structure conservation index 0.68
SVM decision value 0.32
SVM RNA-class probability 0.685126
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10361167 109 - 22224390
CCCAACAUAUACUCAUCUUUGAGUCUCUUUAUUUUCCGAGUGGUCUGUAUGCUCAAAGGGCAACCAGAUAUGUGACCUGUGAGGAUGCACACCAGACACAUA---UGUACAU----
....(((((((((((....))))).............(..((((.(((((.((((.(((...((.......))..))).)))).))))).))))..)..)))---)))....---- ( -29.10)
>DroSec_CAF1 12757 102 - 1
UCU---CUUUAUGGAUAUAUGUGCAUGUAUAUUUUCCGAGUGGUCUGUAUGCUCAAAGGGCAACCAGAUAUGUGACCUGUGAGGAUGCACACCAGACACAUA---UGU--------
...---.....((((...(((((....)))))..))))..((((.(((((.((((.(((...((.......))..))).)))).))))).))))........---...-------- ( -26.50)
>DroSim_CAF1 13085 106 - 1
UCU---CUUUAUGGAUAUAUGUGCAUGUAUAUUUUCCGAGUGGUCUGUAUGCUCAAAGGGCAACCAGAUAUGUGACCUGUGAGGAUGCACACCAGACACAUA---UGUACAU----
...---....(((.((((((((((..(........)....((((.(((((.((((.(((...((.......))..))).)))).))))).))))).))))))---))).)))---- ( -28.40)
>DroEre_CAF1 16414 113 - 1
UCU---CUUUUUGGAUAUAUGUACAUGUAUAUUUCCCGAGUGCACUUUGUGCUCGAAGGGCAACCAAGUAUGUGACCUGUGAGGAUGCACACCAGACACAUACUAUGUACGUACGU
...---...........(((((((((..........((((..(.....)..))))..((....)).((((((((...((((......)))).....)))))))))))))))))... ( -34.50)
>consensus
UCU___CUUUAUGGAUAUAUGUGCAUGUAUAUUUUCCGAGUGGUCUGUAUGCUCAAAGGGCAACCAGAUAUGUGACCUGUGAGGAUGCACACCAGACACAUA___UGUACAU____
...........((((...(((((....)))))..))))..((((.(((((.((((.(((...((.......))..))).)))).))))).))))...................... (-20.05 = -20.68 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:59 2006