| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,342,821 – 10,342,929 |
| Length | 108 |
| Max. P | 0.887547 |
| Location | 10,342,821 – 10,342,929 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 77.35 |
| Mean single sequence MFE | -41.72 |
| Consensus MFE | -27.97 |
| Energy contribution | -28.62 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.887547 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10342821 108 + 22224390 GGGCUGCUGUUGUUGUUGGGACUGCUGUUGCUGCUGGGAAACCUUCGGUUUGGGCUUUAGUUCGUCCAGGCUGCCAGCUAACUUCUCCAGAUCGCUGGGCUGCAGCAU ..(((((.((.((((((((....((....))....((....))..((((((((((........))))))))))))))).)))....((((....)))))).))))).. ( -40.50) >DroGri_CAF1 6979 96 + 1 CGGCUGCUGCGGCUG-------AGCCGUUGGAUUUG-----GCUUCGGUUUAUGCUUUAGCUCAUCCAGGCUGCCGGCGAGCUUUUCCAGAUCAGCGGGCAGGAGUAG ..(((.((((.((((-------(....(((((...(-----((((((((....((((..........)))).))))..)))))..))))).)))))..)))).))).. ( -36.10) >DroSec_CAF1 6699 96 + 1 GGGCUGCUGUU------------GCUGUUGCUGCUGGGAAACCUUCGGUUUGGGCUUCAGUUCGUCCAGGCUGCCAGCUAGCUUCUCCAGAUCGCUGGGCUGCAGCAU ((((.((((..------------(((...((((..((....))..))))...)))..))))..))))..(((((.(((((((.((....))..))).))))))))).. ( -41.50) >DroSim_CAF1 15760 96 + 1 GGGCUGCUGUU------------GCUGUUGCUGCUGGGAAACCUUCGGUUUGGGCUUCAGUUCGUCCAGGCUGCCAGCUAGCUUCUCCAGAUCGCUGGGCUGCAGCAU ((((.((((..------------(((...((((..((....))..))))...)))..))))..))))..(((((.(((((((.((....))..))).))))))))).. ( -41.50) >DroEre_CAF1 6351 108 + 1 GGGCUGUUGUUGCUGUUGGGACUGCUGUUGCUGCUGGGAAACCUUCGGCUUGGGUUUCAGUUCGUCCAGACUGCCGGCUAGCUUCUCCAGAUCGCUGGGCAGCAGCAU ..((((((((.((.(((.((((.((((..((((..((....))..))))........))))..)))).))).))...(((((.((....))..))))))))))))).. ( -42.40) >DroAna_CAF1 7479 96 + 1 CGGCUGUUGCG------------GCUGUGUCUGCGGCAGCACCUUGGGCUUGGGCUUCAGCUCGUCCAGGCUGCCGGCCAGCUUCUCCAGCUCGCUGGGCUGGAGCAG .((((...(((------------(......))))((((((....(((((..((((....))))))))).))))))))))..((.((((((((.....)))))))).)) ( -48.30) >consensus GGGCUGCUGUU____________GCUGUUGCUGCUGGGAAACCUUCGGUUUGGGCUUCAGUUCGUCCAGGCUGCCAGCUAGCUUCUCCAGAUCGCUGGGCUGCAGCAU ..(((((.((.............((((........((....))..((((((((((........)))))))))).))))........((((....)))))).))))).. (-27.97 = -28.62 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:56 2006