| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,335,575 – 10,335,665 |
| Length | 90 |
| Max. P | 0.959122 |
| Location | 10,335,575 – 10,335,665 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 83.33 |
| Mean single sequence MFE | -28.33 |
| Consensus MFE | -20.70 |
| Energy contribution | -22.33 |
| Covariance contribution | 1.62 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.959122 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10335575 90 - 22224390 CAUA--UAUGCAAACACGAGCAUGCCAUCUGGGGGUAUAAUCCAUUUGGUGUGGAUCGUGUGUGCCACCCUGGAGACCAAAAGCACAGUUCA ....--.......((((((.(((((((..((((.......))))..)))))))..))))))((((......(....).....))))...... ( -27.90) >DroSec_CAF1 7600 90 - 1 CAUA--UAUGCAAACACGAGCAUGCCAUCUGGGCGUAUAUUCCAUUUGGUGUGGAUCGUGUGUGCCACCCUGGAGACCAAAAGCACAGUUCA ....--.......((((((.(((((((..((((.......))))..)))))))..))))))((((......(....).....))))...... ( -27.20) >DroEre_CAF1 7792 92 - 1 CAUAUAUAUGCAAACGCGAGCACGCCAUUUGGGCGUAUAAACCAUUUGGCGUGGAUCGUGUGUGCCACCCUGGAGACCAAAAGCACAGUUCA .............((((((.(((((((..(((.........)))..)))))))..))))))((((......(....).....))))...... ( -32.20) >DroYak_CAF1 7425 73 - 1 CAUA--UAUGCAGACACGAUCCAGA-----------------CAUUUGGUGUGGAUCGUGUGUGCCAUCCUGGAGACCAAAAGCACAGUUCA ....--...(((.((((((((((.(-----------------(.....)).)))))))))).)))....(((.............))).... ( -26.02) >consensus CAUA__UAUGCAAACACGAGCAUGCCAUCUGGGCGUAUAAUCCAUUUGGUGUGGAUCGUGUGUGCCACCCUGGAGACCAAAAGCACAGUUCA .............((((((.(((((((..((((.......))))..)))))))..))))))((((......(....).....))))...... (-20.70 = -22.33 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:53 2006