Locus 3878

Sequence ID X_DroMel_CAF1
Location 10,331,758 – 10,331,864
Length 106
Max. P 0.507623
window6375

overview

Window 5

Location 10,331,758 – 10,331,864
Length 106
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.25
Mean single sequence MFE -27.99
Consensus MFE -21.58
Energy contribution -21.58
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.77
SVM decision value -0.05
SVM RNA-class probability 0.507623
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10331758 106 - 22224390
AAUCGCUUGGAGGUGAUAUAGUACUCAAUAUAAAGUCGUACUGUCGGCUUG--------------GCGAUCCGAACUGAAAAGCUAGCCGUCGCAUAAGCGAAACAAAAACCAAACCACU
..(((((((...((((((((((((.............))))))).((((.(--------------((..((......))...)))))))))))).))))))).................. ( -29.22)
>DroSec_CAF1 3555 106 - 1
AAUCGCUUGGAGGUGAUAUAGUACUCAAUAUAAAGUCGUUCUGUCGGCUUG--------------GCGAUCCGAACUGAAAAGCUAGCCGUCGCAUAAGCGAAACCAAAAGCAAACCACU
..(((((((...(((((...............((((((......))))))(--------------((........((....))...)))))))).))))))).................. ( -25.00)
>DroSim_CAF1 3607 106 - 1
AAUCGCUUGGAGGUGAUAUAGUACUCAAUAUAAAGUCGUACUGUCGGCUUG--------------GCGAUCCGAACUGAAAAGCUGGCCGUCGCAUAAGCGAAACCAAAAGCAAACCACU
..(((((((...(((((..(((((.............)))))((((((((.--------------.((........))..)))))))).))))).))))))).................. ( -29.32)
>DroEre_CAF1 3697 106 - 1
AAUCGCUUGACGCUAAUAUAGUACUCAAUAUAAAGUCGUAUUGUCGGCUUG--------------GCGAUCCGAACUGAAAAGCUAGCCGUCGCUUAAGCGAAACCAAUCGCAAACCACU
..((((((((.((............((((((......)))))).(((((.(--------------((..((......))...))))))))..)))))))))).................. ( -25.60)
>DroYak_CAF1 3606 120 - 1
AAUCGCUUGACGCUGAUAUAGUACUCAAUAUAAAGUCGUAUUGUCGGCUUGACGAUCGGCUAUGGGCGAUCCGAACUGAAAAGCCAGCUGUCGCAUAAGCGAAACCAAAAGCAAACCACU
..(((((((..(((((((..((((.............))))))))))).((.(((.(((((...(((..((......))...)))))))))))))))))))).................. ( -30.82)
>consensus
AAUCGCUUGGAGGUGAUAUAGUACUCAAUAUAAAGUCGUACUGUCGGCUUG______________GCGAUCCGAACUGAAAAGCUAGCCGUCGCAUAAGCGAAACCAAAAGCAAACCACU
..(((((((.......................((((((......))))))...............(((((.....((....))......))))).))))))).................. (-21.58 = -21.58 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:52 2006