Locus 3875

Sequence ID X_DroMel_CAF1
Location 10,327,922 – 10,328,022
Length 100
Max. P 0.976784
window6371

overview

Window 1

Location 10,327,922 – 10,328,022
Length 100
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.57
Mean single sequence MFE -37.88
Consensus MFE -16.10
Energy contribution -16.90
Covariance contribution 0.80
Combinations/Pair 1.25
Mean z-score -2.40
Structure conservation index 0.43
SVM decision value 1.78
SVM RNA-class probability 0.976784
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10327922 100 - 22224390
UGUCCGGGAGCGC---GAGCGGAGCAUCGACCGAUCUGGU---AUCGGAUUUGGAGCGGACACAGAGAUACGAAAUC-----GAUAUCGGAUUGGGAAU------CGGAGGC--GGAAG-
..(((....((..---..))...((.((((((((((((((---(((((.((((...(.........)...)))).))-----)))))))))))))...)------)))..))--)))..- ( -36.00)
>DroSec_CAF1 6092 100 - 1
UGUCUGGGAGCGC---GAGCGGAGCGUCGACCGAUCCGGU---AUCGGAUUUGGAGCGGACACAGAGAUACGAAAUC-----GAUAUCGGAUUGGGAAU------CGGAGGC--GGAAG-
.((((....((..---..))....((....((((((((((---(((((.((((...(.........)...)))).))-----)))))))))))))....------)).))))--.....- ( -36.30)
>DroAna_CAF1 7342 107 - 1
-------GAGCGUACAAAACGGAGCGUCGGCCGUUGCGAUUCGAUGCGGUUCGGUUCGGUUGCGGGGAAACGGAAACGAACUGACAUCGGAUAUUGGAA------CGGAAACACGGCAAU
-------..((...(.....)..))((((.(((((.(((((((((((((((((.(((.(((.......))).))).))))))).)))))))..))).))------))).....))))... ( -40.40)
>DroSim_CAF1 5534 100 - 1
UGUCCGGGAGCGC---GAGCGGAGCGUCGACCGAUCCGGU---AUCGGAUUUGGAGCGGACACAGAGAUACGAAAUC-----GAUAUCGGAUUGGGAAU------CGGAGGC--GGAAG-
..(((....((..---..))...((.((((((((((((((---(((((.((((...(.........)...)))).))-----)))))))))))))...)------)))..))--)))..- ( -39.00)
>DroEre_CAF1 6423 106 - 1
UAUCCGGGAGCGC---GAGCGGAGCGUCGAUCGAUCCGGU---AUCGGAUUUGGAGCGGACACAGAGACACGAAAUC-----GAUAUCGGAUUGGGAAUCGGAAUCGGAGGC--GGAAG-
..((((...((..---..)).((...((((((((((((((---(((((.((((...(.........)...)))).))-----))))))))))))...)))))..)).....)--)))..- ( -37.70)
>consensus
UGUCCGGGAGCGC___GAGCGGAGCGUCGACCGAUCCGGU___AUCGGAUUUGGAGCGGACACAGAGAUACGAAAUC_____GAUAUCGGAUUGGGAAU______CGGAGGC__GGAAG_
..((((....(((.....))).........((((((((((.......(((((.(..(.........)...).)))))........))))))))))..........))))........... (-16.10 = -16.90 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:49 2006