| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,322,263 – 10,322,371 |
| Length | 108 |
| Max. P | 0.563446 |
| Location | 10,322,263 – 10,322,371 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.60 |
| Mean single sequence MFE | -44.45 |
| Consensus MFE | -29.83 |
| Energy contribution | -29.88 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.563446 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10322263 108 - 22224390 GUUUAAACGUCGG------------CCGGUUUGAACUGCGGAUUGUGCGAGCGUGCCAUCUUGGCGCGCAGCCACUCGUCCGCGUGACGCUGCUUAAUGUGGACAUACAUAUUGGAGCGG ((((((((.....------------...)))))))).((((((.((((..(((((((.....))))))).).)))..))))))......((((((((((((......)))))).)))))) ( -45.40) >DroVir_CAF1 441 104 - 1 -GCUAGGCGUGCG---------------GCUUGAACUGCGGAUUGUGGGAUCGGGCCAUUUUCGCCUUCAGCCAUUCGUCCGCGUGCCGCUGCUUGAUGUGGACGUACAUGUUGGAGCGA -(((.((((((.(---------------(((.(((..(((((..((((.......)))).))))).)))))))...(((((((((((....))...)))))))))..))))))..))).. ( -39.70) >DroMoj_CAF1 441 108 - 1 AACUACACGUGCG------------GUGGCUUUAAUUGUGGGUUGUGGGAGCGGGCCAUCUUCGCCUUGCGCCACUCGUCCUCAUGCCGCUGCUUGAUGUGGACAUACAUAUUGGAACGG .......((((((------------(((((......((.(((..((((..((((((.......))).))).))))...))).)).))))))))(..(((((......)))))..).))). ( -39.40) >DroAna_CAF1 441 120 - 1 GAUUGCACGGCCGUUGCCUCCGGCCCCGGCUUGAAUUGCGGAUUGUGGGAGCGGGCCAUCUUGGCGCGCAGCCACUCGUCCGCGUGCCGCUGCUUGAUGUGCACAUACAUAUUGGAGCGG ....(((((((((..(((...)))..)))))......((((((.((((..(((.(((.....))).)))..))))..))))))))))((((.(...(((((....)))))...).)))). ( -55.90) >DroSim_CAF1 114 108 - 1 GAUUAAACGUCGG------------CCGGUUUGAACUGCGGAUUGUGCGAGCGUGCCAUCUUGGCGCGCAACCACUCGUCCGCGUGACGCUGCUUAAUGUGGACAUACAUGUUGGAGCGG .......(((((.------------..(((....)))((((((.(((...(((((((.....)))))))...)))..)))))).)))))((((((((((((......)))))).)))))) ( -41.90) >DroEre_CAF1 441 108 - 1 GAUUAAACGUCGG------------CCGGCUUGAACUGCGGAUUGUGCGAGCGUGCCAUUUUGGCGCGCAGCCACUCUUCCGCGUGCCGCUGCUUGAUGUGGACAUACAUGUUGGAGCGG .......(((...------------(((((.((....(((((..((((..(((((((.....))))))).).)))...)))))(((((((........)))).))).)).))))).))). ( -44.40) >consensus GAUUAAACGUCCG____________CCGGCUUGAACUGCGGAUUGUGCGAGCGGGCCAUCUUGGCGCGCAGCCACUCGUCCGCGUGCCGCUGCUUGAUGUGGACAUACAUAUUGGAGCGG ....................................((((((..(((...(((((((.....)))))))...)))...))))))...((((.(..((((((......))))))).)))). (-29.83 = -29.88 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:45 2006