| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,309,207 – 10,309,299 |
| Length | 92 |
| Max. P | 0.622815 |
| Location | 10,309,207 – 10,309,299 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 83.18 |
| Mean single sequence MFE | -11.92 |
| Consensus MFE | -7.21 |
| Energy contribution | -7.03 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.622815 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10309207 92 - 22224390 GAGGAAAUUAAUUUAAAUCGCAAUUUGAAAGUAAGAAAAAAGUUAAGACGAAAGUUAAGAAUCAACAGGAAACGAGUAAGGAAUACCUAAAU .(((.......(((((((....))))))).................(((....)))...........(....)............))).... ( -9.20) >DroSec_CAF1 49475 91 - 1 GAGGAAAUUAAUUUAAAUCGCAAUUCGAAAGUAAGAA-AAAGUUAAGACGAAAGUUAAGAAUCAACAGGAAACGAGUAAGGAAUACCUAAAU .(((...(((((((...((......(....)...)).-.)))))))(((....)))...........(....)............))).... ( -10.70) >DroEre_CAF1 39698 77 - 1 ---GAAAUUAAUUUAAAUCGCAUAACGAAAGUA------------AGACGAAAGUUAAGAUUCAACAGGAAACGUGUAAGGAAUACCUAAUU ---(((.(((((((...(((..(.((....)).------------)..))))))))))..))).((((....).))).(((....))).... ( -12.90) >DroYak_CAF1 37612 77 - 1 ---GAACUUUAUUUAAAUCGCAAAACGAAAGUA------------AGACGAAAGUUAAGAUUCAACAGGAAACGAGUAAGGAAUACCUAAUU ---...((((((((.((((.....((....)).------------.(((....)))..)))).....(....)))))))))........... ( -14.90) >consensus ___GAAAUUAAUUUAAAUCGCAAAACGAAAGUA____________AGACGAAAGUUAAGAAUCAACAGGAAACGAGUAAGGAAUACCUAAAU ...((............(((.....)))..................(((....))).....))....(....).....(((....))).... ( -7.21 = -7.03 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:37 2006