| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,294,733 – 10,294,833 |
| Length | 100 |
| Max. P | 0.881293 |
| Location | 10,294,733 – 10,294,833 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 85.04 |
| Mean single sequence MFE | -29.10 |
| Consensus MFE | -22.70 |
| Energy contribution | -22.70 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.881293 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10294733 100 + 22224390 AAGGAUUGGGUUGUUGAAUCGGCA-ACGGAAGUCUCCUGCCAUUCACCAGUUUAUACACGCUUUUAUCAGUGAUCCAUUAGAUCCAGUUCGGAUAUUUACU---- ..(((((((((((.(((((.((((-..(((....)))))))))))).)..........((((......))))........))))))))))...........---- ( -26.00) >DroSec_CAF1 35218 100 + 1 AAGGAUUGGGUUGCUGAAUCGGCA-ACGGAAGUCGCCUGCCAUUCACCAGUUUAUACAAGCUUUUAUCAGUGAUCCAUUGGAUCCAGUUCGGAUAUUUACU---- ..(((((((((..((((...(((.-((....)).)))...........(((((....)))))....))))..)))))....))))................---- ( -28.50) >DroEre_CAF1 21910 100 + 1 AAGGAUUGGCUUGCCGAAUCGGCA-GCGGCAGUCGACUGCCAUUCGCCAGUUUAUACUCGCUUUUAUCAGUGAUCCAUUGGAUCCAGUUCAGAUAUUUACU---- ..(((((((((.((((...)))))-))(((((....)))))....((.(((....))).))..........(((((...)))))))))))...........---- ( -30.70) >DroYak_CAF1 22819 95 + 1 AAGGAUUGGGUUGCUGAAUCGGCAAACGGAAGUCGACUGCCAUUCAGCAG----------CUUUUAUCAGUGAUCCAUUGGAUUCAGUUGGGAUAUUUGCUAUUU ...(((.((((((((((((.((((.((....))....)))))))))))))----------)))..)))(((.((((((((....))))..))))....))).... ( -31.20) >consensus AAGGAUUGGGUUGCUGAAUCGGCA_ACGGAAGUCGACUGCCAUUCACCAGUUUAUACACGCUUUUAUCAGUGAUCCAUUGGAUCCAGUUCGGAUAUUUACU____ ..(((((((((((.(((((.((((.((....))....))))))))).)...................(((((...)))))))))))))))............... (-22.70 = -22.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:34 2006