Locus 3862

Sequence ID X_DroMel_CAF1
Location 10,294,383 – 10,294,487
Length 104
Max. P 0.534528
window6353

overview

Window 3

Location 10,294,383 – 10,294,487
Length 104
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 85.34
Mean single sequence MFE -25.83
Consensus MFE -18.42
Energy contribution -19.87
Covariance contribution 1.45
Combinations/Pair 1.09
Mean z-score -1.87
Structure conservation index 0.71
SVM decision value 0.00
SVM RNA-class probability 0.534528
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10294383 104 - 22224390
----------AUAUAGUACUGUAUACUGUAUAAAUUA-----CAGCAUGGAAAUCGACAUCUGCUGGCAAUCAACUGUUCACACAAUUGAAUCGUAUUCAAUUGACCAAACAGGAAGCU
----------((((((((.....))))))))......-----(((((((........))..)))))........(((((....(((((((((...)))))))))....)))))...... ( -23.10)
>DroSec_CAF1 34857 110 - 1
----UGCUGUAUAUAGUACUGUAUACUGUAUAAAGUA-----CUGCAUGGAAAUCGACAUCUGCUGGCAAUCAACUGUUCACACAAUUGAAUCGAAUUCAAUUGACCAAACAGGAAGCU
----((((.(((((((((.....))))))))).))))-----(((..(((...........((..((((......))))..))(((((((((...))))))))).)))..)))...... ( -24.30)
>DroYak_CAF1 22397 116 - 1
UGUACACUGUAUAUAG---UGUAUACUGUAUAGAGUACAGUGCUGUAUGGAAAUCGACAUCUGCUGGCAAUCAACUGUUCACACAAUUGAAUCGGAUUCAGUUGACCAAACAGGAAGCU
.((((((((....)))---)))))(((((((...))))))).((((.(((...(((((.....((((...((((.(((....))).)))).)))).....)))))))).))))...... ( -30.10)
>consensus
______CUGUAUAUAGUACUGUAUACUGUAUAAAGUA_____CUGCAUGGAAAUCGACAUCUGCUGGCAAUCAACUGUUCACACAAUUGAAUCGAAUUCAAUUGACCAAACAGGAAGCU
.....(((.(((((((((.....))))))))).)))........(((((........))..))).(((......(((((....(((((((((...)))))))))....)))))...))) (-18.42 = -19.87 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:32 2006