Locus 385

Sequence ID X_DroMel_CAF1
Location 1,138,080 – 1,138,200
Length 120
Max. P 0.596813
window584

overview

Window 4

Location 1,138,080 – 1,138,200
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 98.75
Mean single sequence MFE -40.85
Consensus MFE -40.12
Energy contribution -40.12
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.98
SVM decision value 0.13
SVM RNA-class probability 0.596813
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1138080 120 + 22224390
CUUUCACAUUUUUUUGACGCCCGCUUUUACGAUACGAAAUUACGAUUGUAUAAUAAAGCGGACGGCGGGAAGGAACACAGCGCCGUCGAUGGAGACAUUGCCGGAGCGCAAGUCCUGGGC
...........(((((.((.(((((((....((((((........))))))...))))))).)).)))))((((.....((.(((.(((((....))))).))).)).....)))).... ( -40.30)
>DroSec_CAF1 34710 120 + 1
CUUUCACAUUUUUUUGACGCCCGCUUUUACGAUACGAAAUUACGAUUGUAUAAUAAAGCGGACGGCGGGAAGGAACACAGCGCCGUCGAUGGAGACAUUGCCGGAGCGCAAAUCCUGGGC
...........(((((.((.(((((((....((((((........))))))...))))))).)).)))))((((.....((.(((.(((((....))))).))).)).....)))).... ( -39.20)
>DroEre_CAF1 35811 120 + 1
CUUUCACAUUUUUUUGACGCCCGCUUUUACGAUUCGAAAUUACGAUUGUAUAAUAAAGCGGACGGCGGGAAGGAACACAGCGCCGUCGAUGGAGACAUUGCCGGGGCGCAAGUCCUGGGC
....................(((((((((((((.((......))))))))....)))))))((((((.(........)..))))))(((((....)))))(((((((....))))))).. ( -43.60)
>DroYak_CAF1 35784 120 + 1
CUUUCACAUUUUUUUGACGCCCGCUUUUACGAUACGAAAUUACGAUUGUAUAAUAAAGCGGACGGCGGGAAGGAACACAGCGCCGUCGAUGGAGACAUUGCCGGAGCGCAAGUCCUGGGC
...........(((((.((.(((((((....((((((........))))))...))))))).)).)))))((((.....((.(((.(((((....))))).))).)).....)))).... ( -40.30)
>consensus
CUUUCACAUUUUUUUGACGCCCGCUUUUACGAUACGAAAUUACGAUUGUAUAAUAAAGCGGACGGCGGGAAGGAACACAGCGCCGUCGAUGGAGACAUUGCCGGAGCGCAAGUCCUGGGC
...........(((((.((.(((((((((((((.((......))))))))....))))))).)).)))))((((.....((.(((.(((((....))))).))).)).....)))).... (-40.12 = -40.12 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:12 2006