| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,230,053 – 10,230,143 |
| Length | 90 |
| Max. P | 0.700764 |
| Location | 10,230,053 – 10,230,143 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 77.76 |
| Mean single sequence MFE | -33.03 |
| Consensus MFE | -18.03 |
| Energy contribution | -20.17 |
| Covariance contribution | 2.14 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.700764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10230053 90 + 22224390 CGUCCUGCCGGGCUCCAGGUCAUCCGAUUCCGCGCCGGAGUCCAGGAAUCCUGCAAGCAACUCAAUAU------UGUCGGAUUAC-UGGCCAGAAUG (((.((((((((((((.(((....((....)).))))))))))((.(((((.((((...........)------))).))))).)-))).))).))) ( -29.80) >DroVir_CAF1 37709 93 + 1 GGUUCGUCCCGGUUCCAAGUCGUCCGUCUCAGCGCCGGCAUCCAGAAAGCCUGCGGUAAAAACAAUGUGCAUAAAGCCGG-UUCC-AA-C-ACGAAA .(((.(..((((((....((((..(((....))).))))((((((.....))).))).................))))))-..).-))-)-...... ( -20.70) >DroSec_CAF1 26423 90 + 1 CGUCUUGCCGGGCUCCAGGUCAUCCGAUUCGGCGCCGGAGUCCAGGAAUCCUGCAAGCAAUUCAAUAU------UGUCGGAUUUC-UGGCCAGGAUG ((((((((((((((((.(((...(((...))).))))))))))((((((((.((((...........)------))).)))))))-))).))))))) ( -40.10) >DroSim_CAF1 27097 90 + 1 CGUCUUGCCGGGCUCCAGGUCAUCCGAUUCGGCGCCGGAGUCCAGGAAUCCUGCAAGCAAUUCAAUAU------UGUCGGAUUUC-UGGCCAGGAUG ((((((((((((((((.(((...(((...))).))))))))))((((((((.((((...........)------))).)))))))-))).))))))) ( -40.10) >DroEre_CAF1 27209 90 + 1 CGUCCUGCCGGGCUCCAGGUCAUCUGAUUCCGCACCGGAGUCCAGGAAUCCUGCAUGUAACUCGAUAU------UAAUGGAUUGC-UGGCCAGGAUG ((((((((((((((((.((((..........).))))))))))((.(((((...((((......))))------....))))).)-))).))))))) ( -34.80) >DroYak_CAF1 27916 91 + 1 CGUCCUGCCGGGCUCCAGGUCAUCGGAUUCGGCACCGGAGUCCAGGAAUCCUGCAUGGAACUCGAUAU------UAAUGAAAUGUUUGGCCAGGAUG ((((((((((((((((.(((..(((....))).)))))))))).((..(((.....)))..))(((((------(.....)))))).)).))))))) ( -32.70) >consensus CGUCCUGCCGGGCUCCAGGUCAUCCGAUUCGGCGCCGGAGUCCAGGAAUCCUGCAAGCAACUCAAUAU______UGUCGGAUUGC_UGGCCAGGAUG ((((((((((((((((.(((.............))))))))))...(((((.((.....................)).)))))....)).))))))) (-18.03 = -20.17 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:14 2006