Locus 3847

Sequence ID X_DroMel_CAF1
Location 10,224,308 – 10,224,411
Length 103
Max. P 0.739412
window6331

overview

Window 1

Location 10,224,308 – 10,224,411
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 85.92
Mean single sequence MFE -37.20
Consensus MFE -27.70
Energy contribution -28.38
Covariance contribution 0.68
Combinations/Pair 1.23
Mean z-score -1.84
Structure conservation index 0.74
SVM decision value 0.45
SVM RNA-class probability 0.739412
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10224308 103 + 22224390
CUUACUGUUCGACUUCCUUGUAACCUCGGAACUUUGGAGCACCUCUUGUUGUGCUUCAGCCAGUGCAAAAGUGCAAUUACUAACGGGCGGAAGUUGGUAGGAU
(((((....((((((((.................((((((((........))))))))(((..((((....))))....(....))))))))))))))))).. ( -32.70)
>DroSec_CAF1 20540 103 + 1
CUUACUGAUCGACUUCUUCGUCACCUCGGAACUUUCGAGCAUCUCUUGUUGUGCUUCAGCCAGCGCGAAAGUGCAAUUACUAACGGGAGGAAGUUGGUAGGAU
....((.(((((((((........((((((...))))))...(((((((((.((....))..((((....))))......)))))))))))))))))).)).. ( -34.70)
>DroSim_CAF1 20817 103 + 1
CUUACUGAUCGACUUCUUCGACACCUCGGAACUUUGGAGCAUCUCUUGUUGUGCUUCAGCCAGCGCGAAAGUGCAAUUACUAACGGGCGGAAGUUGGUAGGAU
....((.((((((((((((((....)))))....((((((((........))))))))(((.((((....)))).....(....)))).))))))))).)).. ( -36.90)
>DroEre_CAF1 21454 103 + 1
CUCGCUGAUCGACUUCCGCGUCACCUCGGAGCUUUGGAGCACCGCCUGUUCUGCGUCAGCUAGCGCGAAAGUGCAGCUACUGACGGGCGGACGUUGGAAGGAU
............((((((((((.....((.(((....))).))(((((((....((.((((.((((....)))))))))).))))))).)))).))))))... ( -44.20)
>DroYak_CAF1 22160 103 + 1
CUCACUGCUCGACUUGCGUGUCACCUCAACACUUUGGAGCACCUCUUGUUGGGCUUCGGCCAGCGCGAAAGUGCAAUUGCUGACGGGCGGCAGUUGGAAGGAU
((.((((((......((.(((((.(.(((((....((((...)))))))))(((....))).((((....))))....).))))).)))))))).))...... ( -37.50)
>consensus
CUUACUGAUCGACUUCCUCGUCACCUCGGAACUUUGGAGCACCUCUUGUUGUGCUUCAGCCAGCGCGAAAGUGCAAUUACUAACGGGCGGAAGUUGGUAGGAU
....((..(((((((((((..............(((((((((........)))))))))...((((....))))............)))))))))))..)).. (-27.70 = -28.38 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:12 2006