Locus 3846

Sequence ID X_DroMel_CAF1
Location 10,224,061 – 10,224,157
Length 96
Max. P 0.763632
window6330

overview

Window 0

Location 10,224,061 – 10,224,157
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 93.06
Mean single sequence MFE -22.60
Consensus MFE -20.54
Energy contribution -20.10
Covariance contribution -0.44
Combinations/Pair 1.10
Mean z-score -1.95
Structure conservation index 0.91
SVM decision value 0.51
SVM RNA-class probability 0.763632
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10224061 96 - 22224390
CAUCGAACAGAACGAAAGAUCAAGGUGAAGCAGCUUCAGGCACUGAAGCUUCAUCGGAACAGUCCAAGGCUCAAGCCGAAUCCCAUUCGAAAACCA
..(((((..((.(....).))..(((((...((((((((...)))))))))))))(((....)))..(((....)))........)))))...... ( -28.00)
>DroSec_CAF1 20293 96 - 1
CAUUAAACAGAACGAAAGAUCAAGAUGCAGCAGCUUCAGGCACUGGAGCAUCAUCGGAACAGUCCAAGGCCCAAGCCAAAUACCAUUCGAAACCCA
............((((.......((((.(...(((((((...))))))).)))))(((....)))..(((....)))........))))....... ( -19.90)
>DroSim_CAF1 20570 96 - 1
CAUUAAACAGAACGAAAGAUCAAGAUGCAGCAGCUUCAGGCACUGGAGCAUCAUCGGAACAGUCCAAGGCCCAAGCCAAAUCCCAUUCGAAACCCA
............((((.......((((.(...(((((((...))))))).)))))(((....)))..(((....)))........))))....... ( -19.90)
>consensus
CAUUAAACAGAACGAAAGAUCAAGAUGCAGCAGCUUCAGGCACUGGAGCAUCAUCGGAACAGUCCAAGGCCCAAGCCAAAUCCCAUUCGAAACCCA
............((((.......((((.....(((((((...)))))))..))))(((....)))..(((....)))........))))....... (-20.54 = -20.10 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:11 2006