Locus 3845

Sequence ID X_DroMel_CAF1
Location 10,223,807 – 10,223,907
Length 100
Max. P 0.687727
window6329

overview

Window 9

Location 10,223,807 – 10,223,907
Length 100
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 86.24
Mean single sequence MFE -39.40
Consensus MFE -34.79
Energy contribution -34.13
Covariance contribution -0.65
Combinations/Pair 1.20
Mean z-score -1.58
Structure conservation index 0.88
SVM decision value 0.32
SVM RNA-class probability 0.687727
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10223807 100 - 22224390
AACUCCCCCGGCCAAGGGCAGUAGUUCCCUUAGCCUGGGAAGGUCUCAGGUGGAAAACGCUGUUCCAUUAGCGAUGAGU---------CAGGAGCUACCAAGCACCAGC
.(((((((.(((.(((((........))))).))).)))...(((.(..((((((.......))))))..).)))))))---------..((.(((....))).))... ( -34.40)
>DroSec_CAF1 20030 109 - 1
AGCUCCUCCGGUCAAGGGCAGUAGUUCUCUUAGCCUGGGGAGGUUCCAGGUGGGAAACGCUGCUCCAUCAGGGAUUUGUCAAGAUUCUCAGGAGCUACCAAGCACCAGC
(((((((..(((...(((((((..(((((...(((((((.....))))))))))))..))))))).))).(((((((....))))))).)))))))............. ( -40.60)
>DroSim_CAF1 20307 109 - 1
AGCUCCUCCGGUCAAGGGCAGUAGUUCUCUUAGCCUGGGGAGGUCCCAGGUGGGAAACGCUGCUCCAUCAGGGAUUUGUCUAGAUUCUCAGGAGCUACCAAGCACCAGC
(((((((..(((...(((((((..(((((...(((((((.....))))))))))))..))))))).))).((((.((.....)).)))))))))))............. ( -43.20)
>consensus
AGCUCCUCCGGUCAAGGGCAGUAGUUCUCUUAGCCUGGGGAGGUCCCAGGUGGGAAACGCUGCUCCAUCAGGGAUUUGUC_AGAUUCUCAGGAGCUACCAAGCACCAGC
..((((((.(((.(((((........))))).))).))))))(((((.((((((.........)))))).)))))...............((.(((....))).))... (-34.79 = -34.13 +  -0.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:10 2006