Locus 3844

Sequence ID X_DroMel_CAF1
Location 10,216,174 – 10,216,265
Length 91
Max. P 0.941188
window6328

overview

Window 8

Location 10,216,174 – 10,216,265
Length 91
Sequences 3
Columns 93
Reading direction forward
Mean pairwise identity 87.05
Mean single sequence MFE -24.07
Consensus MFE -17.77
Energy contribution -18.47
Covariance contribution 0.70
Combinations/Pair 1.04
Mean z-score -3.49
Structure conservation index 0.74
SVM decision value 1.32
SVM RNA-class probability 0.941188
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10216174 91 + 22224390
CGAAUACAUAUAGAUUCGCAUGUGUAACAUACAUAUGUG--UAUAUAUAUAGUGGGUAUAAUAUAGCCGACGACUAUAUAGUAAAAUGCGCAG
....(((((((((...((((((((((...))))))))))--..........((.(((........))).))..)))))).))).......... ( -21.70)
>DroSec_CAF1 12503 93 + 1
CGAAUACAUAUAGAUUCGCAUGUGUAACAUACAUAUGUGCAUGUAUAUAUAGUGGGUAUAGUAUAGCCCACGACUAUAUAGUAAAAUGCGCAG
....((((((((.((.((((((((((...)))))))))).)).)))))...((((((........)))))).........))).......... ( -26.20)
>DroSim_CAF1 12728 80 + 1
CGAAUACAUAUAGAUUCGCAUGUGCA---U----------AUAUAUAUAUAGUGGGUAUAGUAUAGCCCACGACUAUAUAGUAAAAUGCGCAG
(((((........)))))..((((((---(----------...((((((..((((((........))))))...)))))).....))))))). ( -24.30)
>consensus
CGAAUACAUAUAGAUUCGCAUGUGUAACAUACAUAUGUG_AUAUAUAUAUAGUGGGUAUAGUAUAGCCCACGACUAUAUAGUAAAAUGCGCAG
(((((........)))))..((((((((((....)))).....((((((..((((((........))))))...))))))......)))))). (-17.77 = -18.47 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:09 2006