Locus 3838

Sequence ID X_DroMel_CAF1
Location 10,206,299 – 10,206,415
Length 116
Max. P 0.997865
window6314

overview

Window 4

Location 10,206,299 – 10,206,415
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 95.34
Mean single sequence MFE -37.78
Consensus MFE -35.12
Energy contribution -35.16
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.96
Structure conservation index 0.93
SVM decision value 2.95
SVM RNA-class probability 0.997865
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10206299 116 - 22224390
UUUGAACACAUGUUUCACUUUACGAAGCAUGGUAAGUGCGCUGACUAACGAUGCGAAUCGAAAGUCUCACGGGUGAGCGAUGUCGAAACGCUUCCCUGGCGAAAGUGCUCCAAUAC
.(((.((.((((((((.......))))))))))..(.(((((((((..((((....))))..))))((.((((..((((.........))))..))))..)).))))).))))... ( -36.20)
>DroSec_CAF1 3290 116 - 1
UUUGAACGCAUGUUUCACUUUACGAAGCAUGGUAAGUGCGCUGACUAACGAUGCGAAUCGAUAGUCUCACGGGUGAGCGAUGUUGAAACGCUUCCCUGGCGAAAGUGCUCCAAUAC
.(((.((.((((((((.......))))))))))..(.((((((((((.((((....)))).)))))((.((((..((((.........))))..))))..)).))))).))))... ( -38.50)
>DroSim_CAF1 3316 116 - 1
UUUGAACACAUGUUUCACUUUACGAAGCAUGGUAAGUGCGCUGACUAACGAUGCGAAUCGAUAGUCUCACGGGUGAGCGAUGUCGAAACGCUUCCCUGGCGAAAGUGCUCCAGUAC
.....((.((((((((.......))))))))))..(.((((((((((.((((....)))).)))))((.((((..((((.........))))..))))..)).))))).)...... ( -38.40)
>DroEre_CAF1 4068 116 - 1
CUUGAACACAUGUUUCACUUUACGAAGCAUGGUAAGUGCGCAGACUAACGAUGCGAAUCGAAAGUCUCACGGGUGAGCGAUGUAGAAACGCUUCCCUGGCGAAAGUGCUGCAAUAU
((((....((((((((.......)))))))).))))((((((((((..((((....))))..)))))..((((..((((.........))))..))))((....)))).))).... ( -37.90)
>DroYak_CAF1 3720 116 - 1
UUCGAACACAUGUUUCACUUUACGAAGCAUGGCAAGUGCGCAGACUAACGAGGCGAAUCGAAAGUCUCACGGGUGAGCGAUGUCGAAACGCUUCCCUGGCGAAAGUGCUUCAAUAC
...(((..((((((((.......))))))))(((....((((((((..(((......)))..)))))..((((..((((.........))))..)))))))....))))))..... ( -37.90)
>consensus
UUUGAACACAUGUUUCACUUUACGAAGCAUGGUAAGUGCGCUGACUAACGAUGCGAAUCGAAAGUCUCACGGGUGAGCGAUGUCGAAACGCUUCCCUGGCGAAAGUGCUCCAAUAC
........((((((((.......))))))))(((....(((.((((..((((....))))..))))...((((..((((.........))))..)))))))....)))........ (-35.12 = -35.16 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:57 2006