Locus 3837

Sequence ID X_DroMel_CAF1
Location 10,205,899 – 10,205,989
Length 90
Max. P 0.553352
window6313

overview

Window 3

Location 10,205,899 – 10,205,989
Length 90
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 86.03
Mean single sequence MFE -20.70
Consensus MFE -14.46
Energy contribution -15.02
Covariance contribution 0.56
Combinations/Pair 1.15
Mean z-score -1.70
Structure conservation index 0.70
SVM decision value 0.04
SVM RNA-class probability 0.553352
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10205899 90 - 22224390
AUAAAUCAAU----CAAUCAUGGCCAACACACUGGCAUUCGAAAGUUUUGGCUAACAGCUAGUUAUGGCCGGAGCAAUUGUAAUCGAUAUUGUU
......((((----...((.((((((....((((((...(....)...((.....))))))))..))))))))...)))).............. ( -20.10)
>DroSec_CAF1 2901 90 - 1
AUAAAUCAAU----CAAUCAUGGCCAACACGCUGGCAUUCGAAAGUUUUGGCUAACAUCUAGUUAUGGCCGGAGCAAUUGUAAUCGAUAUUGUU
......((((----..(((...((((......))))........((((((((((((.....))..))))))))))..........))))))).. ( -19.80)
>DroSim_CAF1 2927 90 - 1
AUAAAUCAAU----CAAUCAUGGCCAACACGCUGGCAUUCGAAAGUUUUGGCUAACAUCUAGUUAUGGCCGGAGCAAUUGUAAUCGAUAUUGUU
......((((----..(((...((((......))))........((((((((((((.....))..))))))))))..........))))))).. ( -19.80)
>DroEre_CAF1 3675 76 - 1
AUAAAUCAAUCAAUCAAUCAUGGCCAA------------CGAAAGUUUGGGCUAACAGCUAGUUAUGGCUGGAGCGAUUGUAAUCAAU------
..........(((((..((.(((((.(------------(....))...))))).((((((....))))))))..)))))........------ ( -23.50)
>DroYak_CAF1 3292 90 - 1
AUAAAUCAAU----CAAUCACGGCCAACACACUGGCAUUCGAAAGUUUGGGCCAACAGCUAGUUAUGGCUGGAGCAAUUGUAAUCAAUAUUGUU
......((((----...((.((((((....((((((...(....)..((......))))))))..))))))))...)))).............. ( -20.30)
>consensus
AUAAAUCAAU____CAAUCAUGGCCAACACACUGGCAUUCGAAAGUUUUGGCUAACAGCUAGUUAUGGCCGGAGCAAUUGUAAUCGAUAUUGUU
......................((((......))))........((((((((((((.....))..)))))))))).((((....))))...... (-14.46 = -15.02 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:56 2006