Locus 3832

Sequence ID X_DroMel_CAF1
Location 10,171,200 – 10,171,306
Length 106
Max. P 0.678949
window6304

overview

Window 4

Location 10,171,200 – 10,171,306
Length 106
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 68.47
Mean single sequence MFE -27.20
Consensus MFE -15.01
Energy contribution -15.07
Covariance contribution 0.06
Combinations/Pair 1.07
Mean z-score -1.50
Structure conservation index 0.55
SVM decision value 0.30
SVM RNA-class probability 0.678949
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10171200 106 - 22224390
CACAAGAAUGUAUUCCC-----------AUUUUGUUAAAACGAAGAAAGCAAAAGCGACUCAUUUAUGUAAAAUGCCGGUUCGGCGAUCCGGUAGCACUGCCUUUUAGUGUGACCAC
.(((.(((((...((..-----------.(((((((...........)))))))..))..))))).)))....(((((...)))))....(((.((((((.....)))))).))).. ( -24.20)
>DroSim_CAF1 2736 103 - 1
CACAAAUAUGUAUUCCA-----------AUUUUGUUA-AACGAAUAAAGCGAAAGCGACUCAUUUGUGUAA-AUGCCGG-UCGGCGAUCCGGUAGCACUGCCUCUUAGUGUGACCAC
(((((((..((......-----------..((((((.-....))))))((....)).))..)))))))...-.((((..-..))))....(((.((((((.....)))))).))).. ( -27.80)
>DroEre_CAF1 5746 111 - 1
UGAACAAAUUCGUACCCAUUUUUAAGAAAUUUCGUUGUAGCGAUGGAAGC------UGCGAAAAAGUGUAAAAUGCCGGUUCGGCGAUCUGGUAGCACUGCCUUUUAGUGUGACCAA
.........(((((((((((((......((((..(((((((.......))------)))))..))))..))))))..)))...))))..((((.((((((.....)))))).)))). ( -28.70)
>DroYak_CAF1 2788 111 - 1
UAAACAAAUCAUUUUCCAUUUUAAGGAAAUUUUCUUAAAACACUGAAAGC------CGGUAGAAAAAGCAAAAUGCCGGUUCGGCGAUCUGGCAGCACUACCUUUUAGUGUGACCAA
..................(((((((((....)))))))))(.((((..((------(((((............))))))))))).)...(((..((((((.....))))))..))). ( -28.10)
>consensus
CAAAAAAAUGUAUUCCC___________AUUUUGUUAAAACGAAGAAAGC______GACUAAAAAAUGUAAAAUGCCGGUUCGGCGAUCCGGUAGCACUGCCUUUUAGUGUGACCAA
.........................................................................(((((...)))))....(((.((((((.....)))))).))).. (-15.01 = -15.07 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:48 2006