| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,170,456 – 10,170,576 |
| Length | 120 |
| Max. P | 0.590498 |
| Location | 10,170,456 – 10,170,576 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.56 |
| Mean single sequence MFE | -28.40 |
| Consensus MFE | -23.21 |
| Energy contribution | -22.78 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.590498 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10170456 120 - 22224390 UCCUAUCUCGCCCCGUCCCUGUCUGGCCUGCAGUUUAUGCAGGCCUACAAAAUCGUGAUUUAUUCUAGAUCUCAGAAGUGAUAAUGAACGCAAAUACACCGCCCAAAUGGCGAACUUAAG .......(((((.......(((..((((((((.....)))))))).))).....(((((((.(((...(((........)))...)))...)))).))).........)))))....... ( -31.00) >DroSim_CAF1 1988 120 - 1 UCCUAUCUCGCCCCGUCCCUGUCUGGCCUGCAGUUUAUGCAGGCCUACAAAAUCGUGAUUUAUUCUAGAUCUCAGAAGUAAUAAUGAACGCAAAUACACCGCCCAAAUGGCGAAUUUAAG .......(((((.......(((..((((((((.....)))))))).)))...((((......((((.(....)))))......)))).....................)))))....... ( -30.00) >DroEre_CAF1 4998 120 - 1 UCCUAUCUCGCCCCAUCCCUGUCUGGCCUGCAGUUUAUGCAGGUCCGCAAGCUCGUGAUUUAUUCUAGAUCUCAGCGAAGAUAAAGUACGCAAAUACACCGCAUAAAUUGCGAAUCGAAG ...((((((((........(((..((((((((.....)))))))).))).....(.((((((...)))))).).))).)))))..(((......)))..((((.....))))........ ( -30.30) >DroYak_CAF1 2065 93 - 1 UCCUAUCUCGCCCCGUCCCUGUCUGGCCUGCAGUUUAUGCAGGUCAACAAAAUCGCGAUUUAUUCUAGAUCUCAGAAGUGAUAAAGUACGCAA--------------------------- .........((........(((.(((((((((.....))))))))))))..(((((((((((...))))))......))))).......))..--------------------------- ( -22.30) >consensus UCCUAUCUCGCCCCGUCCCUGUCUGGCCUGCAGUUUAUGCAGGCCUACAAAAUCGUGAUUUAUUCUAGAUCUCAGAAGUGAUAAAGAACGCAAAUACACCGCCCAAAUGGCGAAUUUAAG .........((........(((..((((((((.....)))))))).))).....(.((((((...)))))).)................))........((((.....))))........ (-23.21 = -22.78 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:44 2006