Locus 383

Sequence ID X_DroMel_CAF1
Location 1,133,806 – 1,133,925
Length 119
Max. P 0.998534
window582

overview

Window 2

Location 1,133,806 – 1,133,925
Length 119
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 89.47
Mean single sequence MFE -51.08
Consensus MFE -41.36
Energy contribution -44.16
Covariance contribution 2.80
Combinations/Pair 1.08
Mean z-score -3.24
Structure conservation index 0.81
SVM decision value 3.13
SVM RNA-class probability 0.998534
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1133806 119 + 22224390
UGCGGGGGUACUGGCAGGCAUUGGGGUUCGGGCUCGCAACGGUGGUGCGGUGGCAUAUGGAAAUUGAUGCAGCAUCUGCGCCGUCCGAAGCGUGCCAAAAAUUGCCCCAAUGAAAGUGC
(((.((....)).)))..(((((((((...(((.(((..(((((((((((..((((((....))..)))).....)))))))).)))..))).))).......)))))))))....... ( -53.70)
>DroSec_CAF1 30444 118 + 1
UGGGGGGGUACUGGGA-GCAUUGGGGUUGGGGCUCGCAACGGUGGUGCGGUGGCAAAUGGAAAUUGAUGCAGCAGCUGCGCCGUCCGAAGCGUGCCAAAAAUUGCCCCAAUGAAAGUGC
.......(((((....-.(((((((((...(((.(((..((((((((((((.((((((....)))..)))....))))))))).)))..))).))).......)))))))))..))))) ( -54.70)
>DroSim_CAF1 31917 119 + 1
UGGGGGGGUACUGGGAGGCAUUGGGGUUGGGGCUCGCAACGGUGGUGCGGUGGCAUAUGGAAAUUGAUGCAGCAGCUGCGCCGUCCGAAGCGUGCCAAAAAUUGCCCCAAUGAAAGUGC
.......(((((......(((((((((...(((.(((..((((((((((((.((((((....))..))))....))))))))).)))..))).))).......)))))))))..))))) ( -54.30)
>DroEre_CAF1 31893 117 + 1
CAGGGGGGUACUGGGCGGUAUUGGGGUAGGGGCUCGCAACGGUGG--CGGCGGCAUAUGGAAAUUGAUGCAGCAGCUGCGCCGUCCGAAGCGUGCCAAAAAUUGCCCCAAUGAAAGUGC
(((.......))).((..(((((((((((.(((.(((..((((((--((.((((...((.(......).))...))))))))).)))..))).))).....)))))))))))...)).. ( -51.00)
>DroYak_CAF1 31446 104 + 1
UGGGGGGGC-------------GGCUUAGGGGCUCGCAACGGUGG--CGAUGGCAUAUGGAAAUUGAUGCAGCAGCUGCGCCGUCCGAAGCGUGCCAAAAAUUGCCCCAAUGAAAGUGC
....(((((-------------((.((...(((.(((..((((((--((.((((...((.(......).))...))))))))).)))..))).)))..)).)))))))........... ( -41.70)
>consensus
UGGGGGGGUACUGGGAGGCAUUGGGGUUGGGGCUCGCAACGGUGGUGCGGUGGCAUAUGGAAAUUGAUGCAGCAGCUGCGCCGUCCGAAGCGUGCCAAAAAUUGCCCCAAUGAAAGUGC
.......(((((......(((((((((...(((.(((..((((((((((((.((((..........))))....))))))))).)))..))).))).......)))))))))..))))) (-41.36 = -44.16 +   2.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:10 2006