Locus 3828

Sequence ID X_DroMel_CAF1
Location 10,169,035 – 10,169,155
Length 120
Max. P 0.632410
window6298

overview

Window 8

Location 10,169,035 – 10,169,155
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.25
Mean single sequence MFE -51.73
Consensus MFE -41.83
Energy contribution -43.57
Covariance contribution 1.75
Combinations/Pair 1.10
Mean z-score -1.59
Structure conservation index 0.81
SVM decision value 0.20
SVM RNA-class probability 0.632410
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10169035 120 - 22224390
GGCGAUCGCCAACGUUUGGAGCAAAAGAUUCGCGCCGAAUUGGGCGAUAUGCUCGAUGAGCCACCGGCUGCGGGUGGAGGCGAACCUGGACAAUUCCAGGUGCUCGCCCAACAGGCUCAG
((((((((((...((((((.((.........)).))))))..)))))).))))...((((((.(((....)))((.(.((((((((((((....)))))))..)))))).)).)))))). ( -56.10)
>DroSim_CAF1 591 120 - 1
GGCGAUCGCCAGCGUUUGGAGCAAAAGAUUCGCGCCGAAUUGGGCGAUAUGCUCGAUGAGCCACCGGCUGCGGGUGGAGGCGAACCCGGACAAUUCCAGGCGCUCGCCCAACAGGCUCAG
((((((((((...((((((.((.........)).))))))..)))))).))))...((((((.(((....)))((.(.(((((.((((((....))).)).).)))))).)).)))))). ( -50.50)
>DroEre_CAF1 3613 120 - 1
GGGGAUCGCCAGCGUUUGGAGCGAAAGAUCCGCGCCGAACUCGGCGACAUGCUCGAUGAGCCACCGGCUGCAGGCGGCAGAGAGGGCGGACAAUUCCAGGUGCUCGCCCAACAGGCUCAG
(((.((((((.(.((((((.(((.......))).)))))).))))))..).)))..((((((....((((....)))).....(((((..((........))..)))))....)))))). ( -52.40)
>DroYak_CAF1 662 120 - 1
GGUGAUCGCCAGCGUUUGGAGCAAAAGAUCCGCGCCGAAUUGGGCGAUAUGCUCGAUGAGCCACCGGCUGCUGGCGGAAGAGAGCCCGGACCAUUCCAGGUGCUCGCCCAACAGGCUCAG
((((((((((...((((((.((.........)).))))))..))))))..((((...))))))))(.(((.((((....).(((((((((....))).)).))))..))).))).).... ( -47.90)
>consensus
GGCGAUCGCCAGCGUUUGGAGCAAAAGAUCCGCGCCGAAUUGGGCGAUAUGCUCGAUGAGCCACCGGCUGCGGGCGGAAGAGAACCCGGACAAUUCCAGGUGCUCGCCCAACAGGCUCAG
((((((((((...((((((.((.........)).))))))..)))))).))))...((((((.(((.(....).))).((((((((((((....))).)).))))))).....)))))). (-41.83 = -43.57 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:42 2006