| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,159,605 – 10,159,708 |
| Length | 103 |
| Max. P | 0.783491 |
| Location | 10,159,605 – 10,159,708 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 86.56 |
| Mean single sequence MFE | -19.42 |
| Consensus MFE | -14.96 |
| Energy contribution | -14.76 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.783491 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10159605 103 - 22224390 ACACAGACAAUCCAUUUUGUCAGCCAACAAUUGAAGCGGAAUGCGGUUUUUCUUUCCUUGUGGCUUGGAUUCCUCUUCUUCUUCUAUU-UUU-UUUUUUGUUUUC ..((((((((......)))))...........((((.(((((.(((((...(.......).))).)).))))).))))..........-...-.....))).... ( -17.40) >DroSec_CAF1 5870 104 - 1 ACACAGACAAUCCAUUUUGUCAGCCAACAAUUGAAGCGGAAUGCGGUUUUUCUUUCCUUGUGGCUUGGAUUCCUCUUCUGUUUUUUUUGUUU-UUUCUUGUUUUC ..((((((((......)))))....(((((..(((((((((.(.((...(((...((....))...)))..)).))))))))))..))))).-.....))).... ( -23.80) >DroSim_CAF1 8489 105 - 1 ACACAGACAAUCCAUUUUGUCAGCCAACAAUUGAAGCGGAAUGCGGUUUUUCUUUCCUUGUGGCUUGGAUUCCUCUUCUGUUUUUUUUGUUUUUUUCUUGUUUUC ..((((((((......)))))....(((((..(((((((((.(.((...(((...((....))...)))..)).))))))))))..))))).......))).... ( -23.80) >DroEre_CAF1 27720 94 - 1 ACACAGACAAUCCAUUUUGUCAGCCAACAAUUGAUGCAGAAUGCGGUUUUUCUUUCCUUGUGGUUUGGAUUCCCCUUAUUU----------U-UUUUCUGAUUUC ...((((.(((((((((((.((..((.....)).))))))))).))))..(((..((....))...)))............----------.-...))))..... ( -15.10) >DroYak_CAF1 8524 96 - 1 ACACAGACAAUCCAUUUUGUCAGCCAACAAUUGAAGCGGAAUGUGGUUUUUCUUUCCUUGUGGUUUGAAUUCCUCCUCCUCUC--------U-AUUUUUGUUCUC .....(((((......)))))....(((((.((.((.(((..(.((...(((...((....))...)))..)).).))).)).--------)-)...)))))... ( -17.00) >consensus ACACAGACAAUCCAUUUUGUCAGCCAACAAUUGAAGCGGAAUGCGGUUUUUCUUUCCUUGUGGCUUGGAUUCCUCUUCUUUUU_U_UU_UUU_UUUUUUGUUUUC .....(((((......)))))(((((.(((..((((.(((((...))))).))))..))))))))........................................ (-14.96 = -14.76 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:34 2006