Locus 3823

Sequence ID X_DroMel_CAF1
Location 10,159,235 – 10,159,345
Length 110
Max. P 0.990837
window6287

overview

Window 7

Location 10,159,235 – 10,159,345
Length 110
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 75.64
Mean single sequence MFE -32.17
Consensus MFE -19.25
Energy contribution -19.70
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -2.44
Structure conservation index 0.60
SVM decision value 2.23
SVM RNA-class probability 0.990837
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10159235 110 + 22224390
CCUCCCCAUGUUCCUAUUUCUCGCACGUGUCUGUGUGCGAGAGUUGUGCAUUGAGUUGCAUAUGGCAUAUUUUUGGGGAUAUCGAGAGGACAU--GAU-------ACGUUUUUUCAUAU
..(((((((((.((...((((((((((......)))))))))).((((((......)))))).)).)))....))))))....((((((((..--...-------..)))))))).... ( -38.00)
>DroEre_CAF1 27355 115 + 1
CCUCCCCAUGUUCCUAUUUCUCGCACGUGUCUGUGUGUGAGAGCU-UGCAUUGAGUUGCAUACGGAAAAU--UUG-GCAUACCGAUGGGUCUUAUGUCGCCCUUGAUGUAUUUUCCUUC
....(((((.((((....(((((((((......)))))))))(..-((((......))))..)))))...--.((-(....))))))))...(((((((....)))))))......... ( -30.30)
>DroYak_CAF1 8154 102 + 1
CCUCCCCAUGUUCCUAUUUCUCGCACGUGCCCGUGUGUGAGAGCU-UGCAUUGACUUGCAUACGGAAAAU--UUG-GGAUACCAAUA-------------CCUUCAUGUAUUUUCAUAU
....((((..((((....(((((((((......)))))))))(..-((((......))))..)))))...--.))-)).....((((-------------(......)))))....... ( -28.20)
>consensus
CCUCCCCAUGUUCCUAUUUCUCGCACGUGUCUGUGUGUGAGAGCU_UGCAUUGAGUUGCAUACGGAAAAU__UUG_GGAUACCGAUAGG_C_U__G____CCUU_AUGUAUUUUCAUAU
..(((.((..((((...((((((((((......))))))))))...((((......))))...))))......)).)))........................................ (-19.25 = -19.70 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:33 2006