Locus 3822

Sequence ID X_DroMel_CAF1
Location 10,156,848 – 10,156,943
Length 95
Max. P 0.994885
window6286

overview

Window 6

Location 10,156,848 – 10,156,943
Length 95
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 69.08
Mean single sequence MFE -28.54
Consensus MFE -10.52
Energy contribution -11.94
Covariance contribution 1.42
Combinations/Pair 1.15
Mean z-score -2.53
Structure conservation index 0.37
SVM decision value 2.52
SVM RNA-class probability 0.994885
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10156848 95 + 22224390
GCCAACGUUGCGUAUGCGUAAUGGCCGAAAGGCGGCAUAAAA--UAGUUGGUACUA----------UGGUGCGUAUACUUGAUGUCCAUGCUUUUUAGCUUAGUACA----
(((..(((((((....)))))))(((....))))))......--......((((((----------(((.((((.......))))))).(((....))).)))))).---- ( -33.70)
>DroSec_CAF1 3190 83 + 1
----------------CGUAAUGGCCGAAAGGCGGCAUAAAA--UAGUUGGUACUA----------UGGUGCGUAUACUUAAUAUCCAUGCAUUGUAACUUGGUGCACGAU
----------------(((.((((((....))).((((...(--((((....))))----------).))))..............)))((((((.....))))))))).. ( -23.20)
>DroSim_CAF1 5772 83 + 1
----------------CGUAAUGGCCGAAAGGCGGCAUAAAA--UAGUUGGUACUA----------UGGUGCGUAUACUUAAUAUCCAUGCAUUUUAACUUGGUGCACGAU
----------------(((.((((((....))).((((...(--((((....))))----------).))))..............)))(((((.......)))))))).. ( -22.90)
>DroEre_CAF1 24970 90 + 1
GCCAACGUUGCGUAUGCGUAAUGGCCGAAAGGCGGCAUAAAA--UAGUUGGUAC-------------------UACGGUGCGUAUAAUUUCUUUUUAACUCAGAACAAGAU
(((..(((((((....)))))))(((....)))))).(((((--.(((((((((-------------------....))))...)))))...))))).............. ( -28.30)
>DroYak_CAF1 5646 111 + 1
GCCAACGUUGCGUAUGCGUAAUGGCCGAAAGGCGGCAAAAAAUAUAGUUGGUACACUUGCGUAUACUUGUGCGUAUACUGCGUAUACUUGCUUUUUUACUAAGAACGAGAU
(((..(((((((....)))))))(((....))))))..((((...(((.((((.((..((((((((......)))))).)))).)))).))).)))).............. ( -34.60)
>consensus
GCCAACGUUGCGUAUGCGUAAUGGCCGAAAGGCGGCAUAAAA__UAGUUGGUACUA__________UGGUGCGUAUACUUAAUAUCCAUGCUUUUUAACUUAGUACAAGAU
.................((....(((....))).((((.......(((..((((((((......))))))))....)))........)))).............))..... (-10.52 = -11.94 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:32 2006