Locus 382

Sequence ID X_DroMel_CAF1
Location 1,132,563 – 1,132,675
Length 112
Max. P 0.870508
window581

overview

Window 1

Location 1,132,563 – 1,132,675
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 80.65
Mean single sequence MFE -30.80
Consensus MFE -20.27
Energy contribution -21.79
Covariance contribution 1.52
Combinations/Pair 1.25
Mean z-score -2.05
Structure conservation index 0.66
SVM decision value 0.87
SVM RNA-class probability 0.870508
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1132563 112 + 22224390
GAGCCGAAAGCAAAAGCCACAAAGCUUCGGCCAAGAAGGCAGAAGAAUUUGGGUAGGUGGGGAAAUUUGCGAAGCAACGACUACUUAUCAAAUGGUACAUUUUGCCUUUGAG
(.((((((.((............)))))))))..((((((((((..((((((.(((((((......((((...))))...)))))))))))))......))))))))))... ( -33.60)
>DroSec_CAF1 29210 103 + 1
GAGUCGAAAGCAAAAGCCACAAAGCUUCGGCCAAAAAGGCAGAACAAUUUGGGUAGGUGGGGAAAUUUGCGAAGUAACGACCACUUAUC---------AUUUUGCCUUUGAG
...(((((.((((((....((((..(((.(((.....))).)))...))))(((((((((......((((...))))...)))))))))---------.)))))).))))). ( -29.60)
>DroSim_CAF1 30669 112 + 1
GAGUCGAAAGCAAAAGCCACAAAGCUUCGGCCAAGAAGGCAGACAAAUUUGGGUAGGUGGGGAAAUUUGCGAAGCAACGACCACUUAUCAAAUUGUACAUUUUGCCUUUGAG
...(((((.(((((((((.....((....))......)))..((((.(((((.(((((((......((((...))))...))))))))))))))))...)))))).))))). ( -32.60)
>DroEre_CAF1 30649 102 + 1
GAGUCGAA------AGCCACAAAGCUUUGGCCAAGAG----GAAGAAUUUGGAAAGGUGGGGAAAUGUGCGGGGCACGAACCACUUAUCAAAUUGUUCAUUUUGCCUGUGAG
...(((((------(((......)))))(((.((((.----(((.(((((((..((((((.....(((((...)))))..)))))).))))))).))).)))))))..))). ( -29.20)
>DroYak_CAF1 30190 107 + 1
GAGUCGAAAGCAAAAGCCACAAAGCUUUGGCCAAAAA----GAAGAGUUCGGAGAGGUGGUGGUAUGUGCGAGGUAAGAG-CACUUAUCAAAUUGUACAUUUCGCCUUUGGG
...(((((.((....(((((....(((((..(.....----.....)..)))))..)))))((.((((((((((((((..-..))))))...)))))))).)))).))))). ( -29.00)
>consensus
GAGUCGAAAGCAAAAGCCACAAAGCUUCGGCCAAGAAGGCAGAAGAAUUUGGGUAGGUGGGGAAAUUUGCGAAGCAACGACCACUUAUCAAAUUGUACAUUUUGCCUUUGAG
(.((((((.((............)))))))))..((((((((((.......(((((((((......((((...))))...)))))))))..........))))))))))... (-20.27 = -21.79 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:09 2006