Locus 3818

Sequence ID	X_DroMel_CAF1
Location	10,143,130 – 10,143,237
Length	107
Max. P	0.557501

overview

Window 9

Location	10,143,130 – 10,143,237
Length	107
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	92.79
Mean single sequence MFE	-22.42
Consensus MFE	-16.06
Energy contribution	-16.38
Covariance contribution	0.31
Combinations/Pair	1.04
Mean z-score	-2.52
Structure conservation index	0.72
SVM decision value	0.05
SVM RNA-class probability	0.557501
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10143130 107 - 22224390
AAUAUGAAGGUGAG----AGCAGGCGAGCGACA--AAAAAGCGAAGGACAAAGUUG-AAGCUCAGCGAAGCGAAAACUUUGAUAAAACUGUCCACAUAUCAAAUGCAAAUAAAU
....(((..(((.(----(.(((..((((..((--(.....(....)......)))-..))))..(((((......)))))......))))))))...)))............. ( -21.90)
>DroSec_CAF1 32473 113 - 1
AAUAUGAAGGUGAGAAAGAGCAGGCAAGGGACAUAAAAAAGCGAAGGACAAAGUUG-AAGCUCAGCGAAGCGAAAACUUUGAUAAAAUUGUCCACAUAUCAAAUGCAAAUAAAU
...................(((......(((((........(....).(((((((.-..(((......)))...))))))).......)))))..........)))........ ( -19.89)
>DroSim_CAF1 23725 113 - 1
AAUAUGAAGGUGAGAAAGACCAGGCAAGGGACAUAAAAAAGCGAAGGACAAAGUUG-AAGCUCAGCGAAGCGAAAACUUUGAUAAAAUUGUCCACAUAUCAAAUGCAAAUAAAU
.(((((..(((.......))).......(((((........(....).(((((((.-..(((......)))...))))))).......))))).)))))............... ( -22.40)
>DroYak_CAF1 25234 112 - 1
AAUAUGAAGGUGAGAAAAAGCUGGCCAGGGACAC--AAAAGCGAAGGACAAAGUUGGAAGCUCAGCGAGGCGAAAACUUUGAUAAAAUUGUCCACAUAUCAAAUGCAAAUAAAU
.(((((..(((.((......)).)))..(((((.--.....(....).(((((((....(((......)))...))))))).......))))).)))))............... ( -25.50)
>consensus
AAUAUGAAGGUGAGAAAGAGCAGGCAAGGGACAU_AAAAAGCGAAGGACAAAGUUG_AAGCUCAGCGAAGCGAAAACUUUGAUAAAAUUGUCCACAUAUCAAAUGCAAAUAAAU
.(((((...((........)).......(((((........(....).(((((((....(((......)))...))))))).......))))).)))))............... (-16.06 = -16.38 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:25 2006