Locus 3817

Sequence ID	X_DroMel_CAF1
Location	10,142,903 – 10,143,012
Length	109
Max. P	0.562257

overview

Window 8

Location	10,142,903 – 10,143,012
Length	109
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	89.51
Mean single sequence MFE	-12.07
Consensus MFE	-10.69
Energy contribution	-10.50
Covariance contribution	-0.19
Combinations/Pair	1.08
Mean z-score	-1.35
Structure conservation index	0.89
SVM decision value	0.06
SVM RNA-class probability	0.562257
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10142903 109 - 22224390
UAAAACAGGGAUUUAAUACACAUAUCAAAAUAAUCCCAGGAAAAA--CCAACGAGUGAACAAGGCAAAAAA-AAAAAAACUUUAUAUCCCUGCC--AGAACAUUUAACAUUGAU
.......((((((..................)))))).((.....--))...(((((.....((((.....-..................))))--....)))))......... ( -12.17)
>DroSec_CAF1 32262 105 - 1
UAAAACAGGGAUUUAAUACACAUAUCAAAAUAAUCCCAGGAAAAA--CCAACGAGUGAACAAAGCUAA-------AAAACUUUAUAUCCCUGCCACAGAACAUUUAACAUUGCU
.....(((((((.(((......................((.....--))....(((.......)))..-------......))).)))))))...................... ( -12.40)
>DroSim_CAF1 23513 105 - 1
UAAAACAGGGAUUUAAUACACAUAUCAAAAUAAUCCCAGGAAAAA--CCAACGAGUGAACAAAGCUAA-------AAAACUUUAUAUCCCUGCCACAGAACAUUUAACAUUGCU
.....(((((((.(((......................((.....--))....(((.......)))..-------......))).)))))))...................... ( -12.40)
>DroYak_CAF1 25008 112 - 1
UCAAACAGGGAUUUAAUACGCACAUCAAAAUAAUCCCAGGAAAAAACCCAACAAGUGUACAAAGCAAAAAAAAAAAAAACUUUAUAUUCCUGCC--AGAACAUUUAACAUUGAU
((((...((((((..................)))))).((.......))...((((((.(...(((........................))).--.).))))))....)))). ( -11.33)
>consensus
UAAAACAGGGAUUUAAUACACAUAUCAAAAUAAUCCCAGGAAAAA__CCAACGAGUGAACAAAGCAAA_______AAAACUUUAUAUCCCUGCC__AGAACAUUUAACAUUGAU
.....(((((((.(((.................((....)).............(....).....................))).)))))))...................... (-10.69 = -10.50 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:25 2006