Locus 3816

Sequence ID X_DroMel_CAF1
Location 10,140,457 – 10,140,571
Length 114
Max. P 0.885376
window6277

overview

Window 7

Location 10,140,457 – 10,140,571
Length 114
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 81.74
Mean single sequence MFE -22.25
Consensus MFE -14.23
Energy contribution -14.72
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.20
Structure conservation index 0.64
SVM decision value 0.94
SVM RNA-class probability 0.885376
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10140457 114 + 22224390
UGGUGGCAUU-UGGCCUCCACUUUAUUAGCCUCAUUAAACGCACUCGAAAAGCGCAAAACUCUCACCUACUGCCGAUUGCCACCCCCCCCCCCCCCCUCUUUUAACUCGUU-UCCU
.(((((((.(-((((.....((.....))...........((.((.....)).))................))))).)))))))...........................-.... ( -22.30)
>DroSec_CAF1 29916 102 + 1
CGGGGGCAUUUUGGCCUCCACUUUAUUAGCCUCAUUAAACGCACUCGAAAAGCGCAAAACUCUCACCUACUGCCGAUUGGC-------------CCCCCUUUUAUACCGUU-UCUC
.((((((...(((((.....((.....))...........((.((.....)).))................)))))...))-------------)))).............-.... ( -23.10)
>DroSim_CAF1 21368 102 + 1
CGGGGGCAUUUUGGCCUCCACUUUAUUAGCCUCAUUAAACGCACUCGAAAAGCGCAAAACUCUCACCUACUGCCGAUUGGC-------------CCCCCUUUUAUACCGUU-UCCC
.((((((...(((((.....((.....))...........((.((.....)).))................)))))...))-------------)))).............-.... ( -23.10)
>DroYak_CAF1 22198 108 + 1
CGGGGGCAUU-UGGCCUCCACUUUAUUAGCCUCAUUAAACGCACUCGAAAAGCGCAAAACUCUCACCUACUGCCGAUCGGCACCCCCUCCCCCCUCCU-------CCAAUUUCCCC
.(((((....-.(((.............))).........((.((.....)).))...............((((....)))))))))...........-------........... ( -20.52)
>consensus
CGGGGGCAUU_UGGCCUCCACUUUAUUAGCCUCAUUAAACGCACUCGAAAAGCGCAAAACUCUCACCUACUGCCGAUUGGC_____________CCCCCUUUUAUACCGUU_UCCC
.((((((......)))))).....................((.((.....)).))................(((....)))................................... (-14.23 = -14.72 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:24 2006