Locus 3814

Sequence ID X_DroMel_CAF1
Location 10,138,935 – 10,139,038
Length 103
Max. P 0.708722
window6269

overview

Window 9

Location 10,138,935 – 10,139,038
Length 103
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 92.85
Mean single sequence MFE -20.50
Consensus MFE -17.02
Energy contribution -16.90
Covariance contribution -0.12
Combinations/Pair 1.04
Mean z-score -1.73
Structure conservation index 0.83
SVM decision value 0.37
SVM RNA-class probability 0.708722
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10138935 103 + 22224390
AUUCAAAUUGAAAAGAAGAACACCAAGGACUAAAGGUCCUUUAAGCUUUCUACUGCAACUUUAAUGGAACACCCUCCACGGAUUUAACCUUAAUGCAUAGAAA
.(((.....)))............((((((.....))))))......(((((.((((.......((((......)))).((......))....))))))))). ( -18.90)
>DroSec_CAF1 28430 102 + 1
AUUCAAGUUGAAAAGAAGAACACCAAGGACUA-AGGUCCUUUAAGCUUUCUACUGCAACUUUAAUGGAACACCCUCCACGGAUUUAGACUUAAUGCAUAGAAA
.(((((((((...((.((((....((((((..-..))))))......)))).)).))))))...((((......)))).....................))). ( -19.90)
>DroSim_CAF1 19886 102 + 1
AUUCAAGUUGAAAAGAAGAACACCAAGGACUA-AGGUCCUUUAAGCUUUCUACUGCAACUUUAAUGGAACACCCUCCACGGAUUUAGACUUAAUGCAUAGAAA
.(((((((((...((.((((....((((((..-..))))))......)))).)).))))))...((((......)))).....................))). ( -19.90)
>DroYak_CAF1 20680 100 + 1
AUUCAUAAUGAACA-AAGGGCA-CAAGGACUA-AGGUCCUUUAAGCUAUCUGCUGCAACUUUAAUGGAACACCCUCCACGGAUUUAGCCUUAAUGCACAGAAA
..............-...(((.-.((((((..-..))))))...))).((((.((((.......((((......)))).((......))....)))))))).. ( -23.30)
>consensus
AUUCAAAUUGAAAAGAAGAACACCAAGGACUA_AGGUCCUUUAAGCUUUCUACUGCAACUUUAAUGGAACACCCUCCACGGAUUUAGACUUAAUGCAUAGAAA
.(((.....)))............((((((.....)))))).....((((((.((((.......((((......)))).(........)....)))))))))) (-17.02 = -16.90 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:17 2006