Locus 3813

Sequence ID X_DroMel_CAF1
Location 10,132,371 – 10,132,480
Length 109
Max. P 0.941647
window6268

overview

Window 8

Location 10,132,371 – 10,132,480
Length 109
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 80.59
Mean single sequence MFE -15.23
Consensus MFE -10.52
Energy contribution -10.97
Covariance contribution 0.45
Combinations/Pair 1.05
Mean z-score -2.29
Structure conservation index 0.69
SVM decision value 1.32
SVM RNA-class probability 0.941647
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10132371 109 + 22224390
CAAUGCUAAGCAUAAUUUGCUCAGUUCUCCUUUCAAGUU-------UUUCCCCUUUGCGAACCAUUUCUGUUUUUGCUAAGGAUACCUUUAAUUCCCCUUCGCAUUUACAUCACUU
.(((((..((((.....))))..................-------.....((((.(((((.((....))..))))).))))...................))))).......... ( -14.70)
>DroSec_CAF1 21974 115 + 1
CAAUGCUAAGCAUAAUUUGCUCAGCUCUCCUUUCAAGUUUACCCCUUUACCCCUUUGCGAACCAUUUCUGUU-UUGCUAAGGAUACCUUUAAUUCCCCUUCGUAUUUACAUCACUU
....(((.((((.....)))).)))..........................((((.(((((.((....)).)-)))).)))).................................. ( -17.40)
>DroSim_CAF1 13378 85 + 1
CAAUGCUAAGCAUAAUUUG------------------------------CCCCUUUGCGAACCAUUUCUGUU-UUGCUAAGGAUACCUUUAAUUCCCCUUCGUAUUUACAUCACUU
.(((((...(((.....))------------------------------).((((.(((((.((....)).)-)))).))))...................))))).......... ( -13.60)
>consensus
CAAUGCUAAGCAUAAUUUGCUCAG_UCUCCUUUCAAGUU_______UU_CCCCUUUGCGAACCAUUUCUGUU_UUGCUAAGGAUACCUUUAAUUCCCCUUCGUAUUUACAUCACUU
.(((((..((((.....))))..............................((((.((((..((....))...)))).))))...................))))).......... (-10.52 = -10.97 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:16 2006