| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,108,931 – 10,109,048 |
| Length | 117 |
| Max. P | 0.798890 |
| Location | 10,108,931 – 10,109,048 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 81.46 |
| Mean single sequence MFE | -26.10 |
| Consensus MFE | -16.37 |
| Energy contribution | -17.24 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.798890 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10108931 117 + 22224390 AUUACAGUUCUUUUGAAAAAUUUCUUAUGAA-UUAUGUCCGCAAAAUGUAUUAGAAGUUUUU-UUUUAGUGUAUGCUCAUCUUAGCAUGCAUAUCAACGAACUCUCUGAGAACUGUGUU ..((((((((((..(((((((((((.(((.(-((.((....)).))).))).))))))))))-)....(((((((((......)))))))))...............)))))))))).. ( -32.30) >DroSim_CAF1 28070 117 + 1 GUUACAGUUAUUUCUAAAAAUUUCUCAUGAUUUUAUGACUGCAACAUGCAUUAGACGUUUU--UUUCAGUGUAUGCGCAUCUUAGCAUGCAUAUCAACGAACUCUCUGAGAACUGUGUU ..(((((((...(((((.......(((((....))))).(((.....)))))))).((((.--.....((((((((........))))))))......))))........))))))).. ( -25.00) >DroYak_CAF1 24762 111 + 1 AUAGCAGUAAUUUGUAAAUAUUGAUAAUGAUUUUAU-----CAUAAUG---UAGAAGUUUUUUUUUCAGUGCUUGCACAUCUUAGCAUGCAUAUCAACGAACUCUCUGAGAACUGUGUU ...((((((((((.((.....((((((.....))))-----)).....---)).)))))....(((((((((.(((........))).))).......(....).)))))))))))... ( -21.00) >consensus AUUACAGUUAUUUCUAAAAAUUUCUAAUGAUUUUAUG_C_GCAAAAUG_AUUAGAAGUUUUU_UUUCAGUGUAUGCACAUCUUAGCAUGCAUAUCAACGAACUCUCUGAGAACUGUGUU ...((((((...............................((.....)).((((((((((........((((((((........))))))))......))))).))))).))))))... (-16.37 = -17.24 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:14 2006