| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,099,287 – 10,099,396 |
| Length | 109 |
| Max. P | 0.744540 |
| Location | 10,099,287 – 10,099,396 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.12 |
| Mean single sequence MFE | -44.82 |
| Consensus MFE | -32.20 |
| Energy contribution | -32.03 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.744540 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10099287 109 - 22224390 --GGAGCGGGA---CAAUCGG------CGACAUUGGCGGGGCCGCCGGCAACGGCCGCAGCUGCCACAGCUGCGAUCAUACCGAUUCUGCCGCUCGGCGUUGCAACGCUGCGCGAUGAUU --.((((((.(---.((((((------.......(((...)))((((....))))((((((((...))))))))......)))))).).)))))).((((.((...)).))))....... ( -52.70) >DroGri_CAF1 12823 106 - 1 -----ACAGUA---UACACGG------CGGCAUUGGCGGGACCGCCAGCAACAGCUGCAGCUGCCACAGCUGCUAUAAUACCCAUACUACCGCUCGGCGUUGCGACGCUGCGCGAUGAUU -----..((((---(....((------(.((..(((((....)))))))....)))(((((((...)))))))..........)))))..(((.((((((....)))))).)))...... ( -40.90) >DroSim_CAF1 16941 109 - 1 --GGAGCGGGA---CAAUCGG------CGACAUUGGCGGGGCCUCCGGCAACGGCCGCAGCUGCCACAGCUGCGAUCAUACCGAUUCUGCCGCUCGGCGUUGCAACGCUGCGCGAUGAUU --.((((((.(---.((((((------.....(((.(((.....))).))).(..((((((((...))))))))..)...)))))).).)))))).((((.((...)).))))....... ( -49.80) >DroWil_CAF1 13075 111 - 1 ---AAACGGGAACUCUUUCUU------CAGCAACGGCGGGCCCACCAGCAACAGCUGCAGCUGCCACAGCUGCCAUAAUACCAAUACUACCGUUGGGCGUUGCGACUCUCCGCGAUGAUU ---....(((((....)))))------...((((((..(.......(((....)))(((((((...))))))).............)..))))))..(((((((......)))))))... ( -32.50) >DroMoj_CAF1 16681 106 - 1 -----AUAGCA---UACACGG------CGGCAUUGGCGGGACCGCCGGCAACAGCGGCAGCUGCAACAGCUGCUAUAAUACCCAUCCUACCGCUCGGCGUUGCCACGCUGCGCGAUGAUU -----......---..(((((------((((...((((....))))((((((...((((((((...))))))))...............((....)).))))))..))))).)).))... ( -43.80) >DroAna_CAF1 28205 117 - 1 CUGGAGCGGGA---CAAACGACGACGACGACAUUGGCGGGGCCGCCGGCAACGGCCGCAGCUGCCACAGCUGCCAUUAUCCCGAUCUUGCCGCUCGGCGUUGCCACGCUGCGCGAUGAUU ..(.((((((.---..((((.(((.(.((.((....(((((..((((....)))).(((((((...))))))).....)))))....)).)))))).)))).)).)))).)......... ( -49.20) >consensus ___GAACGGGA___CAAACGG______CGACAUUGGCGGGGCCGCCGGCAACAGCCGCAGCUGCCACAGCUGCCAUAAUACCGAUACUACCGCUCGGCGUUGCAACGCUGCGCGAUGAUU ......(((((.......................((((....))))(((....)))(((((((...)))))))...........))))).(((.((((((....)))))).)))...... (-32.20 = -32.03 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:10 2006