Locus 3802

Sequence ID X_DroMel_CAF1
Location 10,091,886 – 10,091,982
Length 96
Max. P 0.802821
window6254

overview

Window 4

Location 10,091,886 – 10,091,982
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 97.92
Mean single sequence MFE -23.00
Consensus MFE -20.30
Energy contribution -20.30
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.38
Structure conservation index 0.88
SVM decision value 0.62
SVM RNA-class probability 0.802821
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10091886 96 - 22224390
GCAGAAAGCGGCAAAAGAUAAUCGCCAAUGAUGCGAUUUUAAGUGCAGACAGCCAAGUGUCAGCAGAAAUCAAACCGAAAGGGUUAAAGGAAAACA
(((...(..(((...........)))..)..)))((((((...(((.((((......)))).)))))))))...((....)).............. ( -21.20)
>DroSim_CAF1 8063 96 - 1
GCUGAAAGCGGCAAAAGAUAAUCGCCAAUGAUGCGAUUUUAAGUGCAGACAGCCAAGUGUCAGCAGAAAUCAAACCGAAAGGGUUAAAGGAAAACA
(((((..((.(((......((((((.......)))))).....))).....))......)))))..........((....)).............. ( -22.00)
>DroEre_CAF1 14155 96 - 1
GCAGAAAGCGGCAAAAGAUAAUCGCCAAUGAUGCGAUUUUAAGUGCAGACAGCCAAGUGUCAGCAGAAAUCAAACCGAAAGGGUUAAAGGCGAACA
((.....))............(((((..((((..((((((...(((.((((......)))).)))))))))...((....))))))..)))))... ( -25.80)
>consensus
GCAGAAAGCGGCAAAAGAUAAUCGCCAAUGAUGCGAUUUUAAGUGCAGACAGCCAAGUGUCAGCAGAAAUCAAACCGAAAGGGUUAAAGGAAAACA
.......((.(((......((((((.......)))))).....))).((((......)))).))..........((....)).............. (-20.30 = -20.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:04 2006