| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,091,769 – 10,091,865 |
| Length | 96 |
| Max. P | 0.615314 |
| Location | 10,091,769 – 10,091,865 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 84.30 |
| Mean single sequence MFE | -18.38 |
| Consensus MFE | -13.36 |
| Energy contribution | -12.96 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10091769 96 - 22224390 GAA-AUCG------AAAAAAAAGAAAAACAAAUAAAAGCUACAGAG-----CCAUGAGAACUGAUUUGGUUUGACACACGUGUGUUGGCCAAAAGGCAAACUGAUGAA ...-....------.......................(((....))-----)(((.((...((.(((((.(..((((....))))..))))))...))..)).))).. ( -16.90) >DroSec_CAF1 8210 89 - 1 AAAUAUCG------AAA--------AAACAAAUGAAAGCUACAGAG-----CCAUGAGAACUGAUUUGGUUUGACACACGUGUGAUGGCCAAAAGGCAAGCUGAUGAA ........------...--------...........((((.(((((-----(((............))))))..(((....))).))(((....))).))))...... ( -15.00) >DroSim_CAF1 7953 89 - 1 AAAAAUCG------AAA--------AAACAAAUGAAAACUGCAGAG-----CCAUGAGAACUGAUUUGGUUUGACACACGUGUGAUGGCCAAAAGGCAAGCUGAUGAA ........------...--------................(((.(-----((..(....)...(((((((...(((....)))..))))))).)))...)))..... ( -13.60) >DroEre_CAF1 14047 87 - 1 AAA-AUCG------AAA-------GAAACAAA--AAAACUACAGCG-----CCAUGGGAACUGAUUUGGUUUGACACACGUGUAAUGGCCAAAAGGCAAGCUGAUGAA ...-.((.------...-------))......--.......(((((-----((..(....)...(((((((..(((....)))...))))))).)))..))))..... ( -21.60) >DroYak_CAF1 6768 100 - 1 AAA-AUCGGCAACAAAA-------AAAACAAAUGGAAACUACAGAGGCGAGGCAUGGGAGCUGAUUUGGUUUGACACACGUGUAAUGGCCAAAAGGCAAGCCGAUGAA ...-((((((.......-------.........(....)....................(((..(((((((..(((....)))...))))))).)))..))))))... ( -24.80) >consensus AAA_AUCG______AAA________AAACAAAUGAAAACUACAGAG_____CCAUGAGAACUGAUUUGGUUUGACACACGUGUGAUGGCCAAAAGGCAAGCUGAUGAA ....................................................(((.((...((.(((((((..(((....)))...)))))))...))..)).))).. (-13.36 = -12.96 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:03 2006