| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,131,574 – 1,131,669 |
| Length | 95 |
| Max. P | 0.712079 |
| Location | 1,131,574 – 1,131,669 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 80.55 |
| Mean single sequence MFE | -9.00 |
| Consensus MFE | -6.97 |
| Energy contribution | -7.30 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.712079 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1131574 95 - 22224390 AAAAACACAAAUCGAAAAUACAAAAUCCCCCUUAAAAAUACAAACUAAGCCCCCCAAAAAAAAUCCGCGAUACGCAAGUGUUAAAUGCGAUAUUG----- .................................................................((((((((....)))))....)))......----- ( -8.60) >DroSec_CAF1 28250 92 - 1 AAAAACACAAAACGAAAACACAAAAUCC-CCUGAAAAAUACAAACUAAGCCCCCUA--AAUAAUCCGCGAUACGCAAGUGUUAAAUGCGAUAUUG----- ............................-...........................--.......((((((((....)))))....)))......----- ( -8.60) >DroEre_CAF1 29614 86 - 1 GAAAACACAAAAC----AC----AA-CCCCCUGAAUAAUACAAACUAAGCCCCC-----AAAAUCCGCGAUACGCAAGUGUUAAAUACGAUAUUCAAUUC .............----..----..-.....((((((...........((....-----.......))(((((....)))))........)))))).... ( -9.80) >consensus AAAAACACAAAACGAAAACACAAAAUCCCCCUGAAAAAUACAAACUAAGCCCCC_A__AAAAAUCCGCGAUACGCAAGUGUUAAAUGCGAUAUUG_____ .................................................................((((((((....)))))....)))........... ( -6.97 = -7.30 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:07 2006