Locus 38

Sequence ID X_DroMel_CAF1
Location 168,502 – 168,608
Length 106
Max. P 0.506178
window47

overview

Window 7

Location 168,502 – 168,608
Length 106
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 76.90
Mean single sequence MFE -19.05
Consensus MFE -11.56
Energy contribution -13.38
Covariance contribution 1.81
Combinations/Pair 1.06
Mean z-score -1.67
Structure conservation index 0.61
SVM decision value -0.05
SVM RNA-class probability 0.506178
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 168502 106 - 22224390
---AGCAAAAAACCAAAUUCAGAAACUACAAAAAAAACAGCGGUAGGCACCAAAAAGCGAAAAGUCACACGCUUUUGCUGCAUAGCGAUAGCAUUUUCACUUGCUGGCC
---..................................(((((((....)))...(((.((((((.....)(((.(((((....))))).))).))))).)))))))... ( -20.70)
>DroEre_CAF1 5525 106 - 1
---AGCAGAAAACCAAAAUCAAAAAAUACAAAACACAAAGCGGUGGGCACCCAAAAGCGAAAACUCACACGCUUUUGCUGCAUAGCGAAAGCAGUUUCACUUGCUGGCC
---(((((.((((..........................(((((((....))(((((((..........))))))))))))...((....)).))))...))))).... ( -24.70)
>DroYak_CAF1 3783 106 - 1
---AGCAGAAAAUCAAAAUCAAAAAAUACAAAACACAAAGCGGUAGACACCAAAAAGCGAAAAGUCACACGCUUUUGCUGCACAGCGAAAGCAGUUUCACUUGCUGGCC
---...................................((((((....)))...(((.((((.(.....)(((((((((....)))))))))..)))).)))))).... ( -20.60)
>DroMoj_CAF1 9281 95 - 1
AACAGCAGAAAGCAAAAGCCAACAA---CGAAAAAUAAA---------UCC--AAAAAGAAAAGUCGCACGCUUUUACUGGAAAGCCAAACCAAUUUCACUUGCCGUCU
.((.(((((((((....))......---...........---------(((--(.....((((((.....))))))..))))............))))...))).)).. ( -10.20)
>consensus
___AGCAGAAAACCAAAAUCAAAAAAUACAAAAAACAAAGCGGUAGGCACCAAAAAGCGAAAAGUCACACGCUUUUGCUGCAUAGCGAAAGCAGUUUCACUUGCUGGCC
...(((((.................................(((....)))...................(((((((((....)))))))))........))))).... (-11.56 = -13.38 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:01 2006