Locus 3797

Sequence ID X_DroMel_CAF1
Location 10,076,295 – 10,076,395
Length 100
Max. P 0.619129
window6238

overview

Window 8

Location 10,076,295 – 10,076,395
Length 100
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 71.40
Mean single sequence MFE -16.09
Consensus MFE -4.92
Energy contribution -5.58
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.05
Structure conservation index 0.31
SVM decision value 0.17
SVM RNA-class probability 0.619129
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10076295 100 + 22224390
AGAAU--UAGCCUAGGAAAAAAAAUACAUAACGAUAGA-AUAGAAGAUAGUGAAAAA----------AAAAACAAUUCAUUUGGUCUAACUAACUAGGCGAGCUGUGGAUGCA
.....--..((((((................(....).-.((((....((((((...----------........))))))...)))).....))))))..((.......)). ( -16.10)
>DroPse_CAF1 2180 86 + 1
UCUAC--UAGCCUAUGAAAAAAAAUAUA-----AUAG--AUAGUUGAUAGAA---------------AAAAAUAACUAAUUUGGUCUAGCUAACUAAGCCGGU---AGAGAGA
(((((--..((((((.............-----))))--.((((((.((((.---------------..((((.....))))..))))..)))))).))..))---))).... ( -18.22)
>DroSec_CAF1 2622 101 + 1
AGGAU--UAGCCUAGGAAAAAAAAUACAUAACGAUAGA-AUAGACGAUGGUGAAAAAA---------AAAAACAAUUCAUUUGGUCUAACUAACUAGGCGAGCUGUGGAUGCA
.....--..((((((................(....).-.(((((.(.((((((....---------........))))))).))))).....))))))..((.......)). ( -18.20)
>DroEre_CAF1 2330 98 + 1
AGGAU--UAGCCUAGGAAAAAAAAUACAUAACGAUAGA-AUAGAAGAUAGUGAAAAA------------AAACAAUUCAUUUGGUCUAACUAACUAGGCGAGCUGCGGAUGCA
.....--..((((((................(....).-.((((....((((((...------------......))))))...)))).....))))))..((.......)). ( -16.30)
>DroAna_CAF1 14563 104 + 1
AGGAUUUUAGCCUAGGAAAAA-AAUACAUAACAAUAGAGGUAGGGGAUAGAAAAAAAAAAACAAAAAAAAAGUAAUUCAUUUGGUCUAACUAACUAGGCGGAC--------AA
.........((((((......-..(((.((....))...)))..((.((((..(((.......................)))..)))).))..))))))....--------.. ( -11.80)
>DroPer_CAF1 2407 86 + 1
UCUAC--UAGCCUAUGAAAAAAAAUAUA-----AUAG--AUAGUUGACAGAA---------------AAAAAAAACUAAUUUGGUCUAGCUAACUAAGCCGGU---AGAGAGA
(((((--..((((((.............-----))))--.((((((.((((.---------------.(((........)))..))).).)))))).))..))---))).... ( -15.92)
>consensus
AGGAU__UAGCCUAGGAAAAAAAAUACAUAACGAUAGA_AUAGAAGAUAGAAAAAAA__________AAAAACAAUUCAUUUGGUCUAACUAACUAGGCGAGC___GGAUGCA
.........((((((...................((....))......................................((((.....)))))))))).............. ( -4.92 =  -5.58 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:51 2006