| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,070,545 – 10,070,660 |
| Length | 115 |
| Max. P | 0.523620 |
| Location | 10,070,545 – 10,070,660 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 82.14 |
| Mean single sequence MFE | -37.17 |
| Consensus MFE | -23.27 |
| Energy contribution | -22.83 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.523620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10070545 115 - 22224390 ACUGCUGCAAUGCCAUGUAGAAGCGGGCCAGAUAGACGGGCAGAAUCUCCUCGCCCGUCUUCUUUGCACAGAAGAUCUUGCACAGCGUUCCAAUGGCCUCGGCUCGGCCGGACUC .((.(((((......))))).)).((((((((.((((((((((......)).))))))))))..((((.((.....))))))...........))))))((((...))))..... ( -39.40) >DroVir_CAF1 2395 115 - 1 AUUGUUGCAGUGCCAUAUAAAAGCGCGCUAAAUACACCGGCAGAAUUUCCUCGCCCGUUUUUUUUGCGCAGAAAAUCUUGCAGAGGGUACCAAUUGCCUCGGCGCGUCCAGAUUC ....(((..(((((........((((((.(((...((.(((((......)).))).))...))).))))((.....)).)).((((..........)))))))))...))).... ( -29.70) >DroPse_CAF1 5734 115 - 1 ACUGCUGGAGGGCCAUAUAGAAGCGGGCCAAAUAGACCGGCAGUAUCUCUUCGCCGGUUUUCUUCGCACAGAAUAUCUUGCAAAGUGUACCAAUGGCCUCGGCCCUGCCCGACUC ....(.((((((((..........((((((...((((((((...........)))))))).(((.(((.((.....))))).)))........)))))).)))))).)).).... ( -37.10) >DroGri_CAF1 3438 115 - 1 ACUGCUGCAGCGCCAUAUAGAAACGAGCCAAAUAAACGGGCAGAAUUUCCUCGCCCGUCUUCUUGGCACAAAAUAUUUUGCACAGUGUACCAAUGGCCUCGGCACGUCCCGAUUC ..(((((.((.(((((......((..(((((..(.((((((((......)).)))))).)..))))).((((....))))....))......))))))))))))........... ( -34.40) >DroWil_CAF1 3377 115 - 1 AUUGCUGUAGAGCCAUGUAGAAACGUGCCAAAUAGACGGGUAGAAUUUCUUCGCCCGUCUUUUUGGCACAAAAUAUUUUGCACAAUGUUCCAAUGGCUUCGGCACGUCCGGAUUC ..(((((..(((((((........((((((((.((((((((.(((....))))))))))).))))))))..((((((......))))))...))))))))))))........... ( -44.20) >DroMoj_CAF1 2397 115 - 1 ACUGUUGCAGCGCCAUAUAAAAGCGAGCCAAAUAGACGGGCAGGAUUUCCUCUCCCGUUUUCUUUGCGCAGAAUAUCUUGCAUAGUGUGCCGAUUGCCUCGGCACGGCCGGAUUC (((((.(((((((.........))).((((((.(((((((.(((....)))..)))))))..)))).))........)))))))))(((((((.....))))))).......... ( -38.20) >consensus ACUGCUGCAGCGCCAUAUAGAAGCGAGCCAAAUAGACGGGCAGAAUUUCCUCGCCCGUCUUCUUUGCACAGAAUAUCUUGCACAGUGUACCAAUGGCCUCGGCACGGCCGGAUUC ...((((.((.(((((......((.........((((((((((......)).)))))))).....(((.((.....)))))...))......)))))))))))............ (-23.27 = -22.83 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:50 2006