Locus 3783

Sequence ID X_DroMel_CAF1
Location 10,022,688 – 10,022,808
Length 120
Max. P 0.889149
window6212

overview

Window 2

Location 10,022,688 – 10,022,808
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 88.32
Mean single sequence MFE -36.30
Consensus MFE -33.80
Energy contribution -33.80
Covariance contribution 0.00
Combinations/Pair 1.06
Mean z-score -1.86
Structure conservation index 0.93
SVM decision value 0.95
SVM RNA-class probability 0.889149
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10022688 120 - 22224390
AACGCAGUUUGGUUUUUCAUUUCUCAGUUUCAGUUUCGGUUUUAGCCUCGCCUGUCUGGGAAAGUUAUAGCCAAAGCAGGCCUGCCAAAAUGAAAAAGUGGAGUGUGGGGGUGGUUGGGU
..((((.(..(.((((((((((..(((..........(((....)))..((((((...((..........))...)))))))))...)))))))))).)..).))))............. ( -32.00)
>DroEre_CAF1 29849 110 - 1
AACGCAGUGUGGUUUUUCAUUUCUCAGUUUCAGUUUCGGUU-UGGCUUCGCCUGUCUGGGAAAGUUAUAGCCAAAUCAGGCCUGCCAAAAUGAAAAACUGCAGUGUGGG--UG-------
..((((.((..(((((((((((...............((((-(((((.(.(((....)))...)....))))))))).((....)).)))))))))))..)).))))..--..------- ( -40.20)
>DroYak_CAF1 26898 111 - 1
AACGCAGUUUGGUUUUUCAUUUCUCAGUUUCAGUUACGGUUCUGGCCUCGUCUGUGUGGGAAAGUUAUAGCCAAAGCAGGCCUGCCAAAAUGAAAAACUGGAGUGUGGG--UA-------
..((((.((..(((((((((((....((.......))(((...(((((.(.((...(((...........))).)))))))).))).)))))))))))..)).))))..--..------- ( -36.70)
>consensus
AACGCAGUUUGGUUUUUCAUUUCUCAGUUUCAGUUUCGGUU_UGGCCUCGCCUGUCUGGGAAAGUUAUAGCCAAAGCAGGCCUGCCAAAAUGAAAAACUGGAGUGUGGG__UG_______
..((((.((((((((((((((((((((...(((....(((....)))....))).))))))))......(((......))).........)))))))))))).))))............. (-33.80 = -33.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:20 2006